ESM protein language models for embeddings, sequence scoring, structure prediction, and binder design. Use this skill when: (1) Computing pseudo-log-likelihood (PLL) or mutation-effect scores, (2) Getting protein embeddings for clustering or filtering, (3) Predicting complex structures with ESMFold2, (4) Designing binders by inverting ESMFold2, (5) Filtering designs by sequence plausibility.
How to install esm?
adaptyvbio/protein-design-skills/esm
$npx -y skills add adaptyvbio/protein-design-skills --skill esmInstalls into the current project.
›Prefer a prompt? Paste this to your agent
Run `npx skills use "https://github.com/adaptyvbio/protein-design-skills" --skill "adaptyvbio/protein-design-skills/esm"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/adaptyvbio/protein-design-skills" that are relevant to the current task. Run `npx skills add "https://github.com/adaptyvbio/protein-design-skills"` and select the relevant skills, then follow their instructions.
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