protein_sequence_similarity_search
byai4protein· 26 skills
Find homologous protein sequences from a query sequence using MMseqs2 (fast, ColabFold web API) or BLAST (comprehensive, EBI). Use when the user provides a protein sequence or FASTA file and wants homologs, function inference by sequence similarity, or input for an MSA. Do NOT use for structural similarity (use foldseek) or DNA/RNA queries.
How to install protein_sequence_similarity_search?
ai4protein/venusfactory2/protein_sequence_similarity_search
$npx -y skills add ai4protein/venusfactory2 --skill protein_sequence_similarity_searchInstalls into the current project.
›Prefer a prompt? Paste this to your agent
Run `npx skills use "https://github.com/ai4protein/venusfactory2" --skill "ai4protein/venusfactory2/protein_sequence_similarity_search"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/ai4protein/venusfactory2" that are relevant to the current task. Run `npx skills add "https://github.com/ai4protein/venusfactory2"` and select the relevant skills, then follow their instructions.
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