Headless PyMOL rendering of protein structures (PNG + PSE session) and structural superposition with RMSD. Use to produce static publication-style images, color a structure by pLDDT/B-factor/chain/secondary-structure, or compare two structures by cealign. Do NOT use for interactive 3D exploration (use MolstarViewer in the frontend), docking, MD simulation, or sequence-only analysis.
How to install pymol?
ai4protein/venusfactory2/pymol
$npx -y skills add ai4protein/venusfactory2 --skill pymolInstalls into the current project.
›Prefer a prompt? Paste this to your agent
Run `npx skills use "https://github.com/ai4protein/venusfactory2" --skill "ai4protein/venusfactory2/pymol"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/ai4protein/venusfactory2" that are relevant to the current task. Run `npx skills add "https://github.com/ai4protein/venusfactory2"` and select the relevant skills, then follow their instructions.
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