cibersort-immune-infiltration-analysis
byaipoch· 77 skills
Use when estimating relative immune cell infiltration from a bulk expression matrix with a CIBERSORT-style nu-SVR deconvolution workflow based on an LM22 signature matrix, comparing one case group against one control group, and generating structured tables plus immune-fraction plots. NOT for single-cell RNA-seq, spatial data, clinical diagnosis, or workflows that require the original hosted CIBERSORT web service.
How to install cibersort-immune-infiltration-analysis?
aipoch/medical-research-skills/cibersort-immune-infiltration-analysis
$npx -y skills add aipoch/medical-research-skills --skill cibersort-immune-infiltration-analysisInstalls into the current project.
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Run `npx skills use "https://github.com/aipoch/medical-research-skills" --skill "aipoch/medical-research-skills/cibersort-immune-infiltration-analysis"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/aipoch/medical-research-skills" that are relevant to the current task. Run `npx skills add "https://github.com/aipoch/medical-research-skills"` and select the relevant skills, then follow their instructions.
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