gsva-analysis-and-visualization
byaipoch· 77 skills
Use this skill to run GSVA or ssGSEA pathway-level differential analysis from a bulk expression matrix and a sample group file, then generate a heatmap from the saved GSVA result object. Trigger keywords: GSVA, ssGSEA, pathway enrichment, KEGG pathway analysis, MSigDB. NOT for: gene-level differential expression, single-cell analysis, methylation analysis, clinical diagnosis.
How to install gsva-analysis-and-visualization?
aipoch/medical-research-skills/gsva-analysis-and-visualization
$npx -y skills add aipoch/medical-research-skills --skill gsva-analysis-and-visualizationInstalls into the current project.
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Run `npx skills use "https://github.com/aipoch/medical-research-skills" --skill "aipoch/medical-research-skills/gsva-analysis-and-visualization"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/aipoch/medical-research-skills" that are relevant to the current task. Run `npx skills add "https://github.com/aipoch/medical-research-skills"` and select the relevant skills, then follow their instructions.
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