single-cell-rna-qc
bybiocontext-ai· 2 skills
Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations. Use when users request QC analysis, filtering low-quality cells, assessing data quality, or following scverse/scanpy best practices for single-cell analysis.
How to install single-cell-rna-qc?
biocontext-ai/skill-to-mcp/single-cell-rna-qc
$npx -y skills add biocontext-ai/skill-to-mcp --skill single-cell-rna-qcInstalls into the current project.
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Run `npx skills use "https://github.com/biocontext-ai/skill-to-mcp" --skill "biocontext-ai/skill-to-mcp/single-cell-rna-qc"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/biocontext-ai/skill-to-mcp" that are relevant to the current task. Run `npx skills add "https://github.com/biocontext-ai/skill-to-mcp"` and select the relevant skills, then follow their instructions.
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