R generic interface to Hi-C contact matrices in .(m)cool, .hic or HiC-Pro derived formats, as well as other Hi-C processed file formats. Contact matrices can be partially parsed using a random access method, allowing a memory-efficient representation of Hi-C data in R. The HiCExperiment class stores the Hi-C contacts parsed from local contact matrix files. HiCExperiment instances can be further investigated in R using the HiContacts analysis package.
How to install hicexperiment?
biomate-ai/biomate-bioconductor-kb/hicexperiment
$npx -y skills add biomate-ai/biomate-bioconductor-kb --skill hicexperimentInstalls into the current project.
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Run `npx skills use "https://github.com/biomate-ai/biomate-bioconductor-kb" --skill "biomate-ai/biomate-bioconductor-kb/hicexperiment"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/biomate-ai/biomate-bioconductor-kb" that are relevant to the current task. Run `npx skills add "https://github.com/biomate-ai/biomate-bioconductor-kb"` and select the relevant skills, then follow their instructions.
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