nucleosome-positioning
bygptomics· 59 skills
Map nucleosome center positions, occupancy, and fuzziness from ATAC-seq fragment-size patterns using NucleoATAC, ATACseqQC, DANPOS3, or scprinter. Use when characterizing nucleosome organization at promoters and enhancers, calling +1/-1 nucleosomes flanking NFRs, generating V-plots for chromatin structure visualization, or comparing nucleosome positioning between conditions.
How to install nucleosome-positioning?
gptomics/bioskills/nucleosome-positioning
$npx -y skills add gptomics/bioskills --skill nucleosome-positioningInstalls into the current project.
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Run `npx skills use "https://github.com/gptomics/bioskills" --skill "gptomics/bioskills/nucleosome-positioning"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/gptomics/bioskills" that are relevant to the current task. Run `npx skills add "https://github.com/gptomics/bioskills"` and select the relevant skills, then follow their instructions.
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