archr-project-manipulation
byholobiomicslab· 58 skills
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Use when you have a processed ArchR project object (containing peak calls, cell barcodes, and quality control metadata) and need to: (1) reduce dimensionality of the peak matrix via iterative LSI; (2) integrate multimodal data by combining ATAC and RNA dimensions;
How to install archr-project-manipulation?
holobiomicslab/asb-skill-collections/archr-project-manipulation
$npx -y skills add holobiomicslab/asb-skill-collections --skill archr-project-manipulationInstalls into the current project.
›Prefer a prompt? Paste this to your agent
Run `npx skills use "https://github.com/holobiomicslab/asb-skill-collections" --skill "holobiomicslab/asb-skill-collections/archr-project-manipulation"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/holobiomicslab/asb-skill-collections" that are relevant to the current task. Run `npx skills add "https://github.com/holobiomicslab/asb-skill-collections"` and select the relevant skills, then follow their instructions.
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