atac-seq-bam-read-alignment-processing
byholobiomicslab· 58 skills
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Use when when you have aligned ATAC-seq BAM files and need to quantify Tn5 transposase insertion patterns around specific genomic coordinates (motif sites, peaks, regulatory regions) to detect transcription factor occupancy footprints or compare chromatin accessibility between bound and unbound.
How to install atac-seq-bam-read-alignment-processing?
holobiomicslab/asb-skill-collections/atac-seq-bam-read-alignment-processing
$npx -y skills add holobiomicslab/asb-skill-collections --skill atac-seq-bam-read-alignment-processingInstalls into the current project.
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Run `npx skills use "https://github.com/holobiomicslab/asb-skill-collections" --skill "holobiomicslab/asb-skill-collections/atac-seq-bam-read-alignment-processing"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/holobiomicslab/asb-skill-collections" that are relevant to the current task. Run `npx skills add "https://github.com/holobiomicslab/asb-skill-collections"` and select the relevant skills, then follow their instructions.
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