atac-seq-feature-matrix-construction
byholobiomicslab· 58 skills
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Use when when you have processed scATAC-seq data (peak calling complete, cell-barcode matrix generated) and need to register it into ArchR for downstream multiome analysis alongside scRNA-seq gene expression data.
How to install atac-seq-feature-matrix-construction?
holobiomicslab/asb-skill-collections/atac-seq-feature-matrix-construction
$npx -y skills add holobiomicslab/asb-skill-collections --skill atac-seq-feature-matrix-constructionInstalls into the current project.
›Prefer a prompt? Paste this to your agent
Run `npx skills use "https://github.com/holobiomicslab/asb-skill-collections" --skill "holobiomicslab/asb-skill-collections/atac-seq-feature-matrix-construction"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/holobiomicslab/asb-skill-collections" that are relevant to the current task. Run `npx skills add "https://github.com/holobiomicslab/asb-skill-collections"` and select the relevant skills, then follow their instructions.
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