atac-seq-signal-normalization
byholobiomicslab· 58 skills
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Use when you have aligned ATAC-seq BAM files and need to detect transcription factor binding sites via footprint analysis. The skill is essential because raw Tn5 insertion signal contains systematic bias toward certain DNA sequences;
How to install atac-seq-signal-normalization?
holobiomicslab/asb-skill-collections/atac-seq-signal-normalization
$npx -y skills add holobiomicslab/asb-skill-collections --skill atac-seq-signal-normalizationInstalls into the current project.
›Prefer a prompt? Paste this to your agent
Run `npx skills use "https://github.com/holobiomicslab/asb-skill-collections" --skill "holobiomicslab/asb-skill-collections/atac-seq-signal-normalization"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/holobiomicslab/asb-skill-collections" that are relevant to the current task. Run `npx skills add "https://github.com/holobiomicslab/asb-skill-collections"` and select the relevant skills, then follow their instructions.
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