bam-file-coordinate-sorting-verification
byholobiomicslab· 58 skills
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Use when before invoking pp.make_fragment_file on a BAM file from alignment or external sources, especially when the BAM's sort order is unknown or when integrating BAM files from multiple sequencing platforms (10X, standard genomics pipelines, or custom aligners) into a unified SnapATAC2 analysis.
How to install bam-file-coordinate-sorting-verification?
holobiomicslab/asb-skill-collections/bam-file-coordinate-sorting-verification
$npx -y skills add holobiomicslab/asb-skill-collections --skill bam-file-coordinate-sorting-verificationInstalls into the current project.
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Run `npx skills use "https://github.com/holobiomicslab/asb-skill-collections" --skill "holobiomicslab/asb-skill-collections/bam-file-coordinate-sorting-verification"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/holobiomicslab/asb-skill-collections" that are relevant to the current task. Run `npx skills add "https://github.com/holobiomicslab/asb-skill-collections"` and select the relevant skills, then follow their instructions.
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