barcode-fragment-mapping
byholobiomicslab· 58 skills
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Use when you have a coordinate-sorted BAM file from a single-cell ATAC-seq experiment (especially 10X Genomics platforms) and need to extract per-fragment information including cell barcodes, fragment coordinates, and quality metrics for downstream analysis in SnapATAC2 or compatible tools.
How to install barcode-fragment-mapping?
holobiomicslab/asb-skill-collections/barcode-fragment-mapping
$npx -y skills add holobiomicslab/asb-skill-collections --skill barcode-fragment-mappingInstalls into the current project.
›Prefer a prompt? Paste this to your agent
Run `npx skills use "https://github.com/holobiomicslab/asb-skill-collections" --skill "holobiomicslab/asb-skill-collections/barcode-fragment-mapping"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/holobiomicslab/asb-skill-collections" that are relevant to the current task. Run `npx skills add "https://github.com/holobiomicslab/asb-skill-collections"` and select the relevant skills, then follow their instructions.
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