bed-format-generation-from-dataframe
byholobiomicslab· 58 skills
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Use when you have extracted quantitative genomic features (e.g., insulation scores, boundary annotations) as a pandas DataFrame with bin coordinates and boolean or numeric columns, and need to export them as BED format for visualization in genome browsers (e.
How to install bed-format-generation-from-dataframe?
holobiomicslab/asb-skill-collections/bed-format-generation-from-dataframe
$npx -y skills add holobiomicslab/asb-skill-collections --skill bed-format-generation-from-dataframeInstalls into the current project.
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Run `npx skills use "https://github.com/holobiomicslab/asb-skill-collections" --skill "holobiomicslab/asb-skill-collections/bed-format-generation-from-dataframe"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/holobiomicslab/asb-skill-collections" that are relevant to the current task. Run `npx skills add "https://github.com/holobiomicslab/asb-skill-collections"` and select the relevant skills, then follow their instructions.
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