chip-seq-peak-calling-workflow
byholobiomicslab· 58 skills
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Use when when you have aligned ChIP-Seq reads (single-end BED or paired-end BEDPE format) and need to identify enriched genomic regions by comparing ChIP signal against control background, with the ability to customize fragment length estimation, local bias calculation, and peak score thresholds.
How to install chip-seq-peak-calling-workflow?
holobiomicslab/asb-skill-collections/chip-seq-peak-calling-workflow
$npx -y skills add holobiomicslab/asb-skill-collections --skill chip-seq-peak-calling-workflowInstalls into the current project.
›Prefer a prompt? Paste this to your agent
Run `npx skills use "https://github.com/holobiomicslab/asb-skill-collections" --skill "holobiomicslab/asb-skill-collections/chip-seq-peak-calling-workflow"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/holobiomicslab/asb-skill-collections" that are relevant to the current task. Run `npx skills add "https://github.com/holobiomicslab/asb-skill-collections"` and select the relevant skills, then follow their instructions.
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