chip-seq-read-alignment-filtering
byholobiomicslab· 58 skills
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Use when when beginning peak calling on ChIP-Seq data: you have raw single-end or paired-end BED/BEDPE alignment files for both ChIP and control samples and need to remove duplicate reads before predicting fragment length and building local bias models.
How to install chip-seq-read-alignment-filtering?
holobiomicslab/asb-skill-collections/chip-seq-read-alignment-filtering
$npx -y skills add holobiomicslab/asb-skill-collections --skill chip-seq-read-alignment-filteringInstalls into the current project.
›Prefer a prompt? Paste this to your agent
Run `npx skills use "https://github.com/holobiomicslab/asb-skill-collections" --skill "holobiomicslab/asb-skill-collections/chip-seq-read-alignment-filtering"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/holobiomicslab/asb-skill-collections" that are relevant to the current task. Run `npx skills add "https://github.com/holobiomicslab/asb-skill-collections"` and select the relevant skills, then follow their instructions.
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