configuration-file-generation-and-templating
byholobiomicslab· 58 skills
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Use when when deploying a complex bioinformatics pipeline (like HiC-Pro) across heterogeneous computing environments where required tools (bowtie2, samtools, R, Python) may be installed in non-standard locations, differ in version, or require scheduler-specific configuration (TORQUE, SGE, SLURM.
How to install configuration-file-generation-and-templating?
holobiomicslab/asb-skill-collections/configuration-file-generation-and-templating
$npx -y skills add holobiomicslab/asb-skill-collections --skill configuration-file-generation-and-templatingInstalls into the current project.
›Prefer a prompt? Paste this to your agent
Run `npx skills use "https://github.com/holobiomicslab/asb-skill-collections" --skill "holobiomicslab/asb-skill-collections/configuration-file-generation-and-templating"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/holobiomicslab/asb-skill-collections" that are relevant to the current task. Run `npx skills add "https://github.com/holobiomicslab/asb-skill-collections"` and select the relevant skills, then follow their instructions.
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