contact-frequency-aggregation-by-genomic-feature
byholobiomicslab· 58 skills
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Use when you have a cooler Hi-C contact matrix, a set of genomic features (e.g., CTCF peaks, enhancers, or TAD boundaries defined in BED format), and want to quantify average contact patterns around those features to detect local organization principles.
How to install contact-frequency-aggregation-by-genomic-feature?
holobiomicslab/asb-skill-collections/contact-frequency-aggregation-by-genomic-feature
$npx -y skills add holobiomicslab/asb-skill-collections --skill contact-frequency-aggregation-by-genomic-featureInstalls into the current project.
›Prefer a prompt? Paste this to your agent
Run `npx skills use "https://github.com/holobiomicslab/asb-skill-collections" --skill "holobiomicslab/asb-skill-collections/contact-frequency-aggregation-by-genomic-feature"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/holobiomicslab/asb-skill-collections" that are relevant to the current task. Run `npx skills add "https://github.com/holobiomicslab/asb-skill-collections"` and select the relevant skills, then follow their instructions.
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