cooler-file-loading-and-querying
byholobiomicslab· 58 skills
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Use when your Hi-C data is stored in cooler format (a binary HDF5-based sparse matrix with associated genomic bins and genomic tracks); you need to programmatically access the contact matrix, bin coordinates, or track data (e.g., eigenvectors, GC content) for further analysis;
How to install cooler-file-loading-and-querying?
holobiomicslab/asb-skill-collections/cooler-file-loading-and-querying
$npx -y skills add holobiomicslab/asb-skill-collections --skill cooler-file-loading-and-queryingInstalls into the current project.
›Prefer a prompt? Paste this to your agent
Run `npx skills use "https://github.com/holobiomicslab/asb-skill-collections" --skill "holobiomicslab/asb-skill-collections/cooler-file-loading-and-querying"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/holobiomicslab/asb-skill-collections" that are relevant to the current task. Run `npx skills add "https://github.com/holobiomicslab/asb-skill-collections"` and select the relevant skills, then follow their instructions.
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