bakta-genome-annotation
byjaechang-hits· 57 skills
Annotate bacterial and archaeal genomes and plasmids with Bakta's Prodigal/HMM/diamond pipeline. Identifies CDS, ncRNA, tRNA, rRNA, tmRNA, sORFs, CRISPR arrays, oriC/oriV/oriT, and gaps against a curated UniRef-derived database. Produces NCBI-compatible GFF3, GenBank, EMBL, JSON, FASTA, TSV, and a circular genome plot. Use Prokka for legacy pipelines or non-bacterial kingdoms; PGAP for NCBI GenBank submission.
How to install bakta-genome-annotation?
jaechang-hits/sciagent-skills/bakta-genome-annotation
$npx -y skills add jaechang-hits/sciagent-skills --skill bakta-genome-annotationInstalls into the current project.
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Run `npx skills use "https://github.com/jaechang-hits/sciagent-skills" --skill "jaechang-hits/sciagent-skills/bakta-genome-annotation"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/jaechang-hits/sciagent-skills" that are relevant to the current task. Run `npx skills add "https://github.com/jaechang-hits/sciagent-skills"` and select the relevant skills, then follow their instructions.
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