This skill should be used when the user asks to "create pipeline", "lint pipeline", "build schema", "sync template", "release pipeline", "validate params", or any nf-core pipelines operation. Covers the full nf-core pipeline lifecycle including Nextflow strict syntax validation (Q2 2026 deadline).
How to install pipelines?
jonasscheid/claude-nfcore-plugin/pipelines
$npx -y skills add jonasscheid/claude-nfcore-plugin --skill pipelinesInstalls into the current project.
›Prefer a prompt? Paste this to your agent
Run `npx skills use "https://github.com/jonasscheid/claude-nfcore-plugin" --skill "jonasscheid/claude-nfcore-plugin/pipelines"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/jonasscheid/claude-nfcore-plugin" that are relevant to the current task. Run `npx skills add "https://github.com/jonasscheid/claude-nfcore-plugin"` and select the relevant skills, then follow their instructions.
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