etetoolkit
byk-dense-ai· 237 skills
Analyze, manipulate, compare, annotate, and visualize phylogenetic or other hierarchical trees with ETE 4. Use for Newick/Nexus tree I/O, topology edits and pattern matching, Robinson-Foulds comparisons, gene-tree evolutionary events and reconciliation, NCBI/GTDB taxonomy, SmartView exploration, and publication rendering. Do not use it to infer trees from raw sequences; align sequences and infer a tree first.
How to install etetoolkit?
k-dense-ai/scientific-agent-skills/etetoolkit
$npx -y skills add k-dense-ai/scientific-agent-skills --skill etetoolkitInstalls into the current project.
›Prefer a prompt? Paste this to your agent
Run `npx skills use "https://github.com/k-dense-ai/scientific-agent-skills" --skill "k-dense-ai/scientific-agent-skills/etetoolkit"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/k-dense-ai/scientific-agent-skills" that are relevant to the current task. Run `npx skills add "https://github.com/k-dense-ai/scientific-agent-skills"` and select the relevant skills, then follow their instructions.
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