ginkgo-cloud-lab

Name: ginkgo-cloud-lab
Author: K-Dense-AI

31kstars3.1kforks

How to install ginkgo-cloud-lab?

k-dense-ai/scientific-agent-skills/ginkgo-cloud-lab

$npx -y skills add K-Dense-AI/scientific-agent-skills --skill ginkgo-cloud-lab

Installs into the current project.

Summary

Submit and manage protocols on Ginkgo Bioworks Cloud Lab (cloud.ginkgo.bio), a web-based interface for autonomous lab execution on Reconfigurable Automation Carts (RACs). Use when the user wants to run protein expression and purification (cell-free, E. coli, or Pichia), HiBiT or

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SKILL.md

1	# Ginkgo Cloud Lab
2
3	## Overview
4
5	Ginkgo Cloud Lab (https://cloud.ginkgo.bio) provides remote access to Ginkgo Bioworks' autonomous lab infrastructure. Protocols are executed on Reconfigurable Automation Carts (RACs) -- modular units with robotic arms, maglev sample transport, and industrial-grade software spanning 70+ instruments.
6
7	The platform also includes EstiMate, an AI agent that accepts human-language protocol descriptions and returns feasibility assessments and pricing for custom workflows beyond the listed protocols.
8
9	The catalog is organized into Expression & Purification (in vitro / cell-free / E. coli / Pichia), Characterization & Assay, Method & Target Onboarding, and Specialty. Pick a protocol below, then read its reference file for inputs, outputs, the automated workflow, and ordering details.
10
11	## Available Protocols
12
13	### Expression & Purification - In vitro
14
15	\| Protocol \| Readout \| Price \| Turnaround \| Status \|
16	\|---\|---\|---\|---\|---\|
17	\| [IVT mRNA/circRNA Synthesis](references/ivt-rna-synthesis-qpcr.md) \| qPCR (mRNA or circRNA, 384-well) \| $99/sample \| up to 12 business days \| Certified \|
18
19	### Expression & Purification - Cell-free (E. coli CFPS)
20
21	\| Protocol \| Readout \| Price \| Turnaround \| Status \|
22	\|---\|---\|---\|---\|---\|
23	\| [Validate sequence expression](references/cell-free-protein-expression-validation.md) \| Go/no-go titer + purity (up to 1800 bp) \| $39/sample \| up to 10 days \| Certified \|
24	\| [Optimize expression conditions](references/cell-free-protein-expression-optimization.md) \| DoE across 24 conditions \| $199/sample \| up to 11 days \| Certified \|
25	\| [Express + quantify (HiBiT)](references/cell-free-protein-expression-hibit.md) \| Luminescence, no purification \| $39/sample \| up to 11 days \| Certified \|
26	\| [Express + purify (A280)](references/cfps-strep-tag-purification-a280.md) \| Strep-tag, A280 yield \| $149/sample \| up to 11 days \| Certified \|
27	\| [Express + purify minibinder](references/minibinder-strep-tag-a280.md) \| Strep-tag, A280, LabChip \| $149/sample \| up to 11 days \| Certified \|
28	\| [Express + purify (A280 + LabChip)](references/cfps-expression-purification-quantification.md) \| Strep-tag, A280 + purity/size \| $159/sample \| up to 12 days \| Certified \|
29
30	### Expression & Purification - E. coli
31
32	\| Protocol \| Readout \| Price \| Turnaround \| Status \|
33	\|---\|---\|---\|---\|---\|
34	\| [Express + quantify (HiBiT)](references/ecoli-protein-expression-hibit.md) \| Luminescence (up to 384 constructs) \| $79/sample \| up to 3 weeks \| Certified \|
35	\| [Express + purify (A280)](references/ecoli-protein-expression-histag-a280.md) \| His-tag, A280 yield \| $199/sample \| up to 3 weeks \| Certified \|
36	\| [Express + purify minibinder](references/ecoli-minibinder-expression-histag-a280.md) \| His-tag, A280 yield \| $199/sample \| up to 3 weeks \| Certified \|
37	\| [Express + purify (A280 + LabChip)](references/ecoli-expression-purification-quantification.md) \| His-tag, A280 + purity/size \| $209/sample \| up to 3 weeks \| Certified \|
38
39	### Expression & Purification - Pichia
40
41	\| Protocol \| Readout \| Price \| Turnaround \| Status \|
42	\|---\|---\|---\|---\|---\|
43	\| [Express + quantify (LabChip)](references/pichia-protein-expression-labchip.md) \| Secreted protein, size/purity (up to 96) \| $89/sample \| up to 4 weeks \| Certified (New) \|
44
45	### Characterization & Assay
46
47	\| Protocol \| Readout \| Price \| Turnaround \| Status \|
48	\|---\|---\|---\|---\|---\|
49	\| [Express + thermal shift](references/cfps-strep-purification-thermal-shift.md) \| SYPRO Orange Tm (Tonset, TM1-3) \| $159/sample \| up to 12 days \| Certified \|
50	\| [Detect enzymatic products (Echo-MS)](references/echo-ms-cfps-detection.md) \| Substrate/product by Echo-MS \| $44/sample \| up to 13 days \| Beta \|
51
52	### Method & Target Onboarding
53
54	\| Protocol \| Readout \| Price \| Turnaround \| Status \|
55	\|---\|---\|---\|---\|---\|
56	\| [Onboard Echo-MS method](references/echo-ms-method-onboarding.md) \| Calibration curve, LOD/LOQ \| $799/molecule \| up to 3 weeks \| Certified \|
57	\| [Onboard SPR target](references/spr-target-onboarding.md) \| Validated SPR capture method \| $1,399/target \| up to 4 weeks \| Beta \|
58
59	### Specialty
60
61	\| Protocol \| Readout \| Price \| Turnaround \| Status \|
62	\|---\|---\|---\|---\|---\|
63	\| [Generate fluorescent pixel art](references/fluorescent-pixel-art-generation.md) \| UV photo, 7-color E. coli palette \| $25/plate \| up to 7 days \|

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ginkgo-cloud-lab

31kstars3.1kforks

View on GitHub

How to install ginkgo-cloud-lab?

k-dense-ai/scientific-agent-skills/ginkgo-cloud-lab

$npx -y skills add K-Dense-AI/scientific-agent-skills --skill ginkgo-cloud-lab

Installs into the current project.

Summary

Files · 1

View on GitHub

SKILL.md

1	# Ginkgo Cloud Lab
2
3	## Overview
4
5	Ginkgo Cloud Lab (https://cloud.ginkgo.bio) provides remote access to Ginkgo Bioworks' autonomous lab infrastructure. Protocols are executed on Reconfigurable Automation Carts (RACs) -- modular units with robotic arms, maglev sample transport, and industrial-grade software spanning 70+ instruments.
6
7	The platform also includes EstiMate, an AI agent that accepts human-language protocol descriptions and returns feasibility assessments and pricing for custom workflows beyond the listed protocols.
8
9	The catalog is organized into Expression & Purification (in vitro / cell-free / E. coli / Pichia), Characterization & Assay, Method & Target Onboarding, and Specialty. Pick a protocol below, then read its reference file for inputs, outputs, the automated workflow, and ordering details.
10
11	## Available Protocols
12
13	### Expression & Purification - In vitro
14
15	\| Protocol \| Readout \| Price \| Turnaround \| Status \|
16	\|---\|---\|---\|---\|---\|
17	\| [IVT mRNA/circRNA Synthesis](references/ivt-rna-synthesis-qpcr.md) \| qPCR (mRNA or circRNA, 384-well) \| $99/sample \| up to 12 business days \| Certified \|
18
19	### Expression & Purification - Cell-free (E. coli CFPS)
20
21	\| Protocol \| Readout \| Price \| Turnaround \| Status \|
22	\|---\|---\|---\|---\|---\|
23	\| [Validate sequence expression](references/cell-free-protein-expression-validation.md) \| Go/no-go titer + purity (up to 1800 bp) \| $39/sample \| up to 10 days \| Certified \|
24	\| [Optimize expression conditions](references/cell-free-protein-expression-optimization.md) \| DoE across 24 conditions \| $199/sample \| up to 11 days \| Certified \|
25	\| [Express + quantify (HiBiT)](references/cell-free-protein-expression-hibit.md) \| Luminescence, no purification \| $39/sample \| up to 11 days \| Certified \|
26	\| [Express + purify (A280)](references/cfps-strep-tag-purification-a280.md) \| Strep-tag, A280 yield \| $149/sample \| up to 11 days \| Certified \|
27	\| [Express + purify minibinder](references/minibinder-strep-tag-a280.md) \| Strep-tag, A280, LabChip \| $149/sample \| up to 11 days \| Certified \|
28	\| [Express + purify (A280 + LabChip)](references/cfps-expression-purification-quantification.md) \| Strep-tag, A280 + purity/size \| $159/sample \| up to 12 days \| Certified \|
29
30	### Expression & Purification - E. coli
31
32	\| Protocol \| Readout \| Price \| Turnaround \| Status \|
33	\|---\|---\|---\|---\|---\|
34	\| [Express + quantify (HiBiT)](references/ecoli-protein-expression-hibit.md) \| Luminescence (up to 384 constructs) \| $79/sample \| up to 3 weeks \| Certified \|
35	\| [Express + purify (A280)](references/ecoli-protein-expression-histag-a280.md) \| His-tag, A280 yield \| $199/sample \| up to 3 weeks \| Certified \|
36	\| [Express + purify minibinder](references/ecoli-minibinder-expression-histag-a280.md) \| His-tag, A280 yield \| $199/sample \| up to 3 weeks \| Certified \|
37	\| [Express + purify (A280 + LabChip)](references/ecoli-expression-purification-quantification.md) \| His-tag, A280 + purity/size \| $209/sample \| up to 3 weeks \| Certified \|
38
39	### Expression & Purification - Pichia
40
41	\| Protocol \| Readout \| Price \| Turnaround \| Status \|
42	\|---\|---\|---\|---\|---\|
43	\| [Express + quantify (LabChip)](references/pichia-protein-expression-labchip.md) \| Secreted protein, size/purity (up to 96) \| $89/sample \| up to 4 weeks \| Certified (New) \|
44
45	### Characterization & Assay
46
47	\| Protocol \| Readout \| Price \| Turnaround \| Status \|
48	\|---\|---\|---\|---\|---\|
49	\| [Express + thermal shift](references/cfps-strep-purification-thermal-shift.md) \| SYPRO Orange Tm (Tonset, TM1-3) \| $159/sample \| up to 12 days \| Certified \|
50	\| [Detect enzymatic products (Echo-MS)](references/echo-ms-cfps-detection.md) \| Substrate/product by Echo-MS \| $44/sample \| up to 13 days \| Beta \|
51
52	### Method & Target Onboarding
53
54	\| Protocol \| Readout \| Price \| Turnaround \| Status \|
55	\|---\|---\|---\|---\|---\|
56	\| [Onboard Echo-MS method](references/echo-ms-method-onboarding.md) \| Calibration curve, LOD/LOQ \| $799/molecule \| up to 3 weeks \| Certified \|
57	\| [Onboard SPR target](references/spr-target-onboarding.md) \| Validated SPR capture method \| $1,399/target \| up to 4 weeks \| Beta \|
58
59	### Specialty
60
61	\| Protocol \| Readout \| Price \| Turnaround \| Status \|
62	\|---\|---\|---\|---\|---\|
63	\| [Generate fluorescent pixel art](references/fluorescent-pixel-art-generation.md) \| UV photo, 7-color E. coli palette \| $25/plate \| up to 7 days \|

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