Use when running coarse-grained (CG) molecular dynamics with MARTINI 3. Covers protein CG with martinize2, membrane assembly with insane.py (POPC/POPE/CHOL bilayers), GROMACS CG workflows, backmapping CG to all-atom, and CG membrane analysis.
How to install coarse-grained?
kdevos12/alkyl/coarse-grained
$npx -y skills add kdevos12/alkyl --skill coarse-grainedInstalls into the current project.
›Prefer a prompt? Paste this to your agent
Run `npx skills use "https://github.com/kdevos12/alkyl" --skill "kdevos12/alkyl/coarse-grained"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/kdevos12/alkyl" that are relevant to the current task. Run `npx skills add "https://github.com/kdevos12/alkyl"` and select the relevant skills, then follow their instructions.
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