tooluniverse-gene-enrichment
bymims-harvard· 57 skills
Gene-set enrichment analysis — GO (Biological Process, Molecular Function, Cellular Component), KEGG, Reactome pathway enrichment via clusterProfiler, gseapy, ORA, GSEA. Use for interpreting DEG lists, screen hit lists, or any gene-list-to-pathways query. Includes simplify-cutoff handling and union-vs-total denominator conventions for percent-DE questions.
How to install tooluniverse-gene-enrichment?
mims-harvard/tooluniverse/tooluniverse-gene-enrichment
$npx -y skills add mims-harvard/tooluniverse --skill tooluniverse-gene-enrichmentInstalls into the current project.
›Prefer a prompt? Paste this to your agent
Run `npx skills use "https://github.com/mims-harvard/tooluniverse" --skill "mims-harvard/tooluniverse/tooluniverse-gene-enrichment"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/mims-harvard/tooluniverse" that are relevant to the current task. Run `npx skills add "https://github.com/mims-harvard/tooluniverse"` and select the relevant skills, then follow their instructions.
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