bynvidia-bionemo· 32 skills
Run a complete protein binder design campaign with NVIDIA Proteina-Complexa: resolve a target structure and hotspots from a name/sequence/PDB, co-design binder sequence+structure with reward-guided test-time search (best-of-n, beam search, FK steering, MCTS), select with the internal AF2 reward gate, then INDEPENDENTLY validate each binder by refolding the complex with Boltz2 (default) or OpenFold3 and rank on interface confidence, pLDDT, ipSAE, apo/holo stability, and hotspot contact. Use whenever the user wants de novo binders against a named target, sequence, or PDB, hotspot/epitope-targeted design, Proteina-Complexa / Complexa, or ranked validated binders from one request. Sibling of protein-binder-design (RFdiffusion + ProteinMPNN); this skill uses Proteina-Complexa.
$npx -y skills add nvidia-bionemo/bionemo-agent-toolkit --skill complexa-binder-designInstalls into the current project.
Run `npx skills use "https://github.com/nvidia-bionemo/bionemo-agent-toolkit" --skill "nvidia-bionemo/bionemo-agent-toolkit/complexa-binder-design"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/nvidia-bionemo/bionemo-agent-toolkit" that are relevant to the current task. Run `npx skills add "https://github.com/nvidia-bionemo/bionemo-agent-toolkit"` and select the relevant skills, then follow their instructions.