TCGA bulk RNA-seq preprocessing with pyTCGA: GDC sample sheets, expression archives, clinical metadata, Kaplan-Meier survival analysis, and annotated AnnData export.
How to install tcga-preprocessing?
omicverse/omicclaw/tcga-preprocessing
$npx -y skills add omicverse/omicclaw --skill tcga-preprocessingInstalls into the current project.
›Prefer a prompt? Paste this to your agent
Run `npx skills use "https://github.com/omicverse/omicclaw" --skill "omicverse/omicclaw/tcga-preprocessing"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/omicverse/omicclaw" that are relevant to the current task. Run `npx skills add "https://github.com/omicverse/omicclaw"` and select the relevant skills, then follow their instructions.
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