jonasscheid/claude-nfcore-plugin
6 subagents
Subagent
lint-fixerAutonomously fixes nf-core lint errors and warnings. Use when there are lint issues to fix, after running lint, when preparing for release, or when the pipeline has validation errors.module-creatorHelps create new nf-core modules from scratch with proper structure, containers, tests, and documentation. Use when wrapping new bioinformatics tools, creating custom modules, or contributing modules nf-core-reviewerReviews code for nf-core compliance and best practices. Use proactively when reviewing PRs, checking code quality, ensuring nf-core standards are met, or validating pipeline changes before merge.pipeline-architectAnalyzes existing pipelines and plans architectural changes, migrations, and refactoring. Use when modernizing a pipeline, migrating to strict syntax, restructuring workflows, or planning architecturapipeline-explorerExplores and analyzes nf-core pipeline structure, understanding workflows, modules, and configurations. Use proactively when needing to understand a pipeline's architecture, trace data flow, find spectest-writerCreates nf-test tests for modules and workflows. Use when writing tests for new code, improving test coverage, creating snapshot tests, debugging test failures, or setting up testing infrastructure.