Structure similarity search with Foldseek. Use this skill when: (1) Finding similar structures in PDB/AFDB databases, (2) Structural homology search, (3) Database queries by 3D structure, (4) Finding remote homologs not detected by sequence, (5) Clustering structures by similarity.
How to install foldseek?
adaptyvbio/protein-design-skills/foldseek
$npx -y skills add adaptyvbio/protein-design-skills --skill foldseekInstalls into the current project.
›Prefer a prompt? Paste this to your agent
Run `npx skills use "https://github.com/adaptyvbio/protein-design-skills" --skill "adaptyvbio/protein-design-skills/foldseek"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/adaptyvbio/protein-design-skills" that are relevant to the current task. Run `npx skills add "https://github.com/adaptyvbio/protein-design-skills"` and select the relevant skills, then follow their instructions.
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