RCSB Protein Data Bank (PDB) — experimentally determined 3D biomolecular structures. Search by full-text/sequence/structure/attribute, fetch entry metadata, download coordinate files (PDB/mmCIF). Use when the user provides a PDB ID, asks for structures of a protein, wants to find similar structures by sequence, or needs experimental (not predicted) coordinates. Don't use for AlphaFold predictions (use alphafold_database).
How to install rcsb_database?
ai4protein/venusfactory2/rcsb_database
$npx -y skills add ai4protein/venusfactory2 --skill rcsb_databaseInstalls into the current project.
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Run `npx skills use "https://github.com/ai4protein/venusfactory2" --skill "ai4protein/venusfactory2/rcsb_database"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/ai4protein/venusfactory2" that are relevant to the current task. Run `npx skills add "https://github.com/ai4protein/venusfactory2"` and select the relevant skills, then follow their instructions.
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