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…/encode-toolkit/ucsc-browser
home/skills/ammawla/encode-toolkit/ucsc-browser
ammawla avatar

ucsc-browser

byammawla· 47 skills

Stars

30

Forks

5

Category

Research

View on GitHub

TL;DR

Query the UCSC Genome Browser REST API to retrieve regulatory tracks, DNA sequences, cCRE annotations, TF binding clusters, and track schemas for any genomic region. Use when the user wants to look up what regulatory elements exist at a genomic locus, retrieve DNA sequence under peaks, query ENCODE cCREs or TF rPeak clusters from UCSC, check what tracks are available for a genome assembly, get chromatin accessibility across cell types, or cross-reference ENCODE data with UCSC-hosted annotations. Also use when the user mentions UCSC, genome browser, cCRE lookup, SCREEN, TF binding clusters, DNA sequence retrieval, or track data extraction.

How to install ucsc-browser?

ammawla/encode-toolkit/ucsc-browser
$npx -y skills add ammawla/encode-toolkit --skill ucsc-browser

Installs into the current project.

›Prefer a prompt? Paste this to your agent

Use this skill

Run `npx skills use "https://github.com/ammawla/encode-toolkit" --skill "ammawla/encode-toolkit/ucsc-browser"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.

Use the whole pack

Use the skills in "https://github.com/ammawla/encode-toolkit" that are relevant to the current task. Run `npx skills add "https://github.com/ammawla/encode-toolkit"` and select the relevant skills, then follow their instructions.

Preview

ammawla/encode-toolkitammawla/encode-toolkit

$ npx -y skills add ammawla/encode-toolkit --skill ucsc-browser

▸ installing to .claude/skills…

✓ ucsc-browser ready

Repoammawla/encode-toolkit
TypeSkills
CategoryResearch
ForResearcherAnalyst
UpdatedJul 2026
License—
First seenJul 26, 2026

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