nextflow-development
byanthropics· 237 skills
Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA. Triggers on nf-core, Nextflow, FASTQ analysis, variant calling, gene expression, differential expression, GEO reanalysis, GSE/GSM/SRR accessions, or samplesheet creation.
How to install nextflow-development?
anthropics/knowledge-work-plugins/nextflow-development
$npx -y skills add anthropics/knowledge-work-plugins --skill nextflow-developmentInstalls into the current project.
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Run `npx skills use "https://github.com/anthropics/knowledge-work-plugins" --skill "anthropics/knowledge-work-plugins/nextflow-development"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/anthropics/knowledge-work-plugins" that are relevant to the current task. Run `npx skills add "https://github.com/anthropics/knowledge-work-plugins"` and select the relevant skills, then follow their instructions.
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