aperivue/medsci-skills
57 skills · 2,693 total installs
$npx skills add aperivue/medsci-skillsSkillInstalls
meta-analysisSystematic review and meta-analysis pipeline for medical research.analyze-statsStatistical analysis for medical research papers. Generates reproducible Python/R code with publication-ready tables and figures.make-figuresGenerate publication-ready figures and visual abstracts for medical research papers.check-reportingCheck manuscript compliance with medical research reporting guidelines.find-journalJournal recommendation engine for medical manuscripts. 2-pass matching against a curated public profile library plus any user-local private profiles, enriched…fill-icmje-coiBatch-generate per-author ICMJE Conflict of Interest Disclosure Forms (`coi_disclosure.docx`) for manuscript submission.peer-reviewPeer review assistant for medical journals. Generates structured review drafts with journal-specific formatting.find-cohort-gapResearch gap finder for longitudinal cohort databases. Profiles cohort strengths, matches PI expertise, scans literature saturation, and outputs ranked topic…orchestrateGeneral-purpose research orchestrator. Routes ambiguous or multi-step requests to the right skill(s) from the medsci-skills bundle.search-litLiterature search and citation management for medical research. Searches PubMed, Semantic Scholar, and bioRxiv/medRxiv with verified citations.self-reviewPre-submission self-review for the user's own manuscripts, applying a reviewer perspective. Systematic check across 10 categories with research-type branching.write-paperFull-pipeline medical/scientific paper writing. 8-phase IMRAD workflow from outline to submission-ready manuscript.academic-aioMedical AI paper optimization for AI search engines (Perplexity, ChatGPT web, Elicit, Consensus, SciSpace) and RAG-based literature tools.add-journalAdd a new journal to the MedSci Skills profile database. Extracts metadata from author guidelines, generates write-paper (detailed) and find-journal (compact)…author-strategyPubMed author profile analysis. Author name → PubMed fetch → study-type classification → visualization → strategy report → optional trajectory-archetype…calc-sample-sizeInteractive sample size calculator for medical research. Decision-tree guided test selection, reproducible R/Python code, effect size interpretation, and…design-studyStudy design and validity review for radiology and medical AI research.humanizeDetect and remove AI writing patterns from academic manuscripts and response-to-reviewers letters.ma-scoutMeta-analysis topic discovery and feasibility assessment. Professor-first (profile → gap) or Topic-first (question → gap → co-author).verify-refsAudit-only verification of manuscript references against PubMed and CrossRef. Detects fabricated or mismatched citations and writes qc/reference_audit.json.batch-cohortGenerate N analysis scripts from a single methodology template × multiple exposure/outcome combinations.fill-protocolFill institutional Word form templates (.doc/.docx) for IRB protocols, ethics applications, grant proposals, and other structured research documents while…fulltext-retrievalBatch download open-access PDFs by DOI using legitimate OA APIs (Unpaywall, PMC, OpenAlex, Crossref).grant-builderGrant and challenge proposal support for radiology and medical AI projects.intake-projectIntake and normalize a new radiology research project. Classifies project type, summarizes current state, identifies missing inputs, recommends next steps, and…manage-refsCross-cutting reference manager for medical manuscripts. Single entry point for citation-key validation, journal-CSL pandoc rendering, manuscript ↔ DOCX…present-paperAcademic presentation preparation — paper-driven (journal club, grand rounds, seminar) and lecture/teaching decks (course material, workshop slides, conference…render-pdf-docRender academic Markdown documents (English or Korean) to publication-quality PDF via pandoc + xelatex.reviseParse peer reviewer comments and generate a structured Response to Reviewers document with tracked manuscript changes.clean-dataInteractive data profiling and cleaning assistant for medical research.cross-nationalEnd-to-end cross-national comparison study using KNHANES + NHANES + CHNS (or other parallel surveys).deidentifyDe-identify clinical research data before LLM-assisted analysis.lit-syncSync research references from .bib files to Zotero library + Obsidian literature notes. Extract cross-cutting concept notes when enough literature accumulates.publish-skillConvert a personal agent skill into a distributable, open-source-ready skill.replicate-studyReplicate an existing cohort study's methodology on a different database.sync-submissionAudit SSOT-to-submission drift and create journal submission manifests from canonical manuscript artifacts.define-variablesLiterature-grounded variable operationalization for observational research.setup-medsciDiagnostic checklist for the MedSci Skills runtime. Verifies Python, R, Node, Claude Code, Git, Zotero, and configured MCP servers, and prints a pass/fail…polish-languageAcademic English consistency linting and non-native (ESL) language polish for medical manuscripts.design-ai-benchmarkingDesign and validity review for studies that benchmark one or more AI systems against a human-expert panel as the reference.generate-codebookGenerate a citable data dictionary / codebook from a tabular dataset (CSV/TSV/Excel/Parquet/Stata/SAS).review-paperScaffold and draft medical/AI literature reviews (narrative, scoping PRISMA-ScR, or systematic).version-datasetDataset version control for research reproducibility. Builds a deterministic content-hash manifest of a dataset (file SHA-256 + tabular schema + per-column…manage-projectResearch project management for medical manuscripts. Scaffold project structure, track writing progress across phases, maintain project memory files, generate…architecture-zooChoose a model architecture for a medical-imaging research question before scaffolding.mllm-evalDesign or audit a model-agnostic evaluation harness for an LLM or multimodal LLM on a clinical task (radiology report generation, visual question answering,…model-cardGenerate the documentation an engineer-built medical-imaging model must carry — a Model Card (Mitchell et al. 2019), a Datasheet for its dataset (Gebru et al.model-evaluationCompute and report task-correct held-out metrics for a trained medical-imaging model — segmentation (Dice plus a boundary metric such as HD95 or NSD, per…model-scaffoldGenerate a reproducible, runnable PyTorch training repo for a medical-imaging task — segmentation, classification, detection, image-to-image synthesis,…model-validationDesign or audit the clinical-validation study for an engineer-built medical-imaging model (segmentation, classification, or detection) before the validation…explainabilityProduce or audit the interpretability/explainability analysis of a medical-imaging model — Grad-CAM / Grad-CAM++ / attention-rollout / saliency /…preprocess-imagingDesign or audit the data-preparation stage of a medical-imaging model — DICOM/NIfTI intake, resampling and intensity normalisation, and the augmentation plan —…radiomics-mlProduce or audit a radiomics / tabular clinical-ML study — imaging or clinical features → any classical learner (penalised logistic [LASSO / ridge /…uncertainty-imagingDesign or audit the uncertainty-quantification, out-of-distribution (OOD) detection, and selective-prediction layer of a medical-imaging model framed for…contributeOffer your local changes back to the project — a journal profile you added, a checklist item you fixed, a skill you adapted to your department — as a pull…model-sourcingVet the concrete third-party model a study will be built on — this repository, this revision, this checkpoint — not the architecture family.profile-imagingProfile a medical-imaging dataset before any modelling decision is made — the acquisition grid, voxel spacing and orientation spread, the intensity domain,…