alphagenome_single_variant_analysis
bygoogle-deepmind· 38 skills
Analyzes genetic variant effects on gene expression (RNA-seq), chromatin accessibility (DNASE), histone marks (ChIP), and transcription factors using the AlphaGenome API. Use when the user asks about non-coding variant effects, pathogenicity, clinical significance, disease associations, functional effects, gene expression changes, splicing disruption, or regulatory effects in promoters and enhancers. Also use for resolving biological terms to tissue/cell-type ontologies (UBERON/CL) or analyzing variants in chr:pos:ref>alt format.
How to install alphagenome_single_variant_analysis?
google-deepmind/science-skills/alphagenome_single_variant_analysis
$npx -y skills add google-deepmind/science-skills --skill alphagenome_single_variant_analysisInstalls into the current project.
›Prefer a prompt? Paste this to your agent
Run `npx skills use "https://github.com/google-deepmind/science-skills" --skill "google-deepmind/science-skills/alphagenome_single_variant_analysis"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/google-deepmind/science-skills" that are relevant to the current task. Run `npx skills add "https://github.com/google-deepmind/science-skills"` and select the relevant skills, then follow their instructions.
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