google-deepmind/science-skills
38 skills · 2,856 total installs
$npx skills add google-deepmind/science-skillsSkillInstalls
uvChecks whether the uv Python package manager is installed and installs it if missing. Ensures uv is on PATH.pymolVisualize, analyze, and render protein and molecular structures using PyMOL.credentialsInstructions for handling API keys and credentials safely, verifying their presence, and prompting the user to add them if missing using a safe protocol.predictingthepastAncient text restoration, attribution, dating, contextualization, and embedding via Aeneas (Latin) / Ithaca (Ancient Greek).alphafold_database_fetch_and_analyzeRetrieve and analyze AlphaFold predicted structures for a protein.alphagenome_single_variant_analysisAnalyzes genetic variant effects on gene expression (RNA-seq), chromatin accessibility (DNASE), histone marks (ChIP), and transcription factors using the…chembl_databaseQuery the ChEMBL database for bioactive molecules, drug targets, bioactivity data, approved drugs, and chemical structures.clinical_trials_databaseQuery ClinicalTrials.gov via APIv2. Use when you want to search for trials by condition, drug, location, status, or phase; retrieve trial details by NCT ID;…clinvar_databaseUse when needing clinical significance, pathogenicity classifications (e.g., Pathogenic, Benign, VUS), clinical evidence rationales, or finding "hard positive"…dbsnp_databaseUse when you want to look up, map, and search for short genetic variants (SNPs, indels) in NCBI's dbSNP database.embl_ebi_olsQuery and search the EMBL-EBI Ontology Lookup Service (OLS) for biomedical ontology terms, definitions, and hierarchies across 250+ ontologies (e.g., GO, DOID,…encode_ccres_databaseQuery the ENCODE Registry of cis-Regulatory Elements (cCREs) via the SCREEN GraphQL API, or make custom queries to the ENCODE Portal REST API for experiments…ensembl_databaseQuery the Ensembl database to resolve gene, transcript, and protein IDs, fetch genomic or protein sequences, retrieve gene structures (exons), and get variant…foldseek_structural_searchPerforms 3D structural searches of proteins against various databases (PDB, AlphaFold, CATH, MGnify, etc.) using the Foldseek API.gnomad_databaseQuery the Genome Aggregation Database (gnomAD). Use when determining the rarity or allele frequency of specific genetic variants, retrieving gene constraint…gtex_databaseUse when you want to retrieve quantitative RNA expression data and variant eQTL information from the GTEx (Genotype-Tissue Expression) Project across 54…human_protein_atlas_databaseUse when you want to retrieve semi-quantitative protein expression and spatial localisation data from the Human Protein Atlas (HPA).interpro_databaseIdentify domains, families, and sites in proteins; find all proteins in a family or sharing a domain; explore species distribution for a domain; annotate…jaspar_databaseQuery the JASPAR database for Transcription Factor (TF) binding profiles.literature_search_arxivSearch for scientific papers, preprints, and publications on arXiv. Extract metadata, abstracts, and download full-text PDFs or HTML versions of papers.literature_search_biorxivBrowse, filter, and download life sciences, biology, and medical preprints from bioRxiv and medRxiv.literature_search_europepmcSearch Europe PMC for scientific literature and download open-access full texts and PDFs.literature_search_openalexQuery the OpenAlex scholarly database for research papers, authors, institutions, topics, sources, publishers, funders, geo-locations, and keywords.ncbi_sequence_fetchRetrieve protein and nucleotide sequences from NCBI databases using E-utilities.openfda_databaseQuery, search, and download data from the openFDA API for drugs, devices, foods, tobacco, cosmetics, animal and veterinary products, substances, and…opentargets_databaseQuery Open Targets Platform for target-disease associations, drug target discovery, tractability/safety data, genetics/omics evidence, known drugs, for…pdb_databaseUse when you want to search for or download experimentally-determined 3D structures for biomolecules (proteins, nucleic acids, bound ligands).protein_sequence_msaPerforms multiple sequence alignment of proteins with EBI Clustal Omega.protein_sequence_similarity_searchSearches for homologous protein sequences using MMseqs2 (fast, default) or BLAST (comprehensive, fallback).pubchem_databaseQuery PubChem, search by name/CID/SMILES, retrieve properties, similarity/substructure searches, bioactivity, for cheminformatics.pubmed_databaseSearch PubMed for scientific literature, including published clinical trials. Fetch abstracts and full text.quickgo_databaseQuery the QuickGO and Evidence & Conclusion Ontology (ECO) REST API.reactome_databaseQuery the Reactome database (Analysis and Content Services). Use when the user asks about pathway analysis, gene list enrichment, retrieving results by token,…string_databaseQuery the STRING database for protein-protein interactions (PPIs), functional enrichment, and homology.ucsc_conservation_and_tfbsFetch Evolutionary Conservation scores (phyloP, phastCons) and Transcription Factor Binding Sites (TFBS) from the UCSC Genome Browser.unibind_databaseQueries the UniBind database for experimentally validated transcription factor (TF) binding sites.uniprot_databaseAccess protein metadata, function, taxonomy, and sequences across UniProtKB, UniParc, and UniRef.workflow_skill_creatorDistills a completed user workflow or interaction into a reusable agent skill.