foldseek_structural_search
bygoogle-deepmind· 38 skills
Performs 3D structural searches of proteins against various databases (PDB, AlphaFold, CATH, MGnify, etc.) using the Foldseek API. Use ONLY when the user provides a physical 3D coordinate file (.cif, .mmcif, or .pdb) and wants to find structurally similar proteins. Do NOT use if the user only provides a protein sequence, gene name, or UniProt ID.
How to install foldseek_structural_search?
google-deepmind/science-skills/foldseek_structural_search
$npx -y skills add google-deepmind/science-skills --skill foldseek_structural_searchInstalls into the current project.
›Prefer a prompt? Paste this to your agent
Run `npx skills use "https://github.com/google-deepmind/science-skills" --skill "google-deepmind/science-skills/foldseek_structural_search"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/google-deepmind/science-skills" that are relevant to the current task. Run `npx skills add "https://github.com/google-deepmind/science-skills"` and select the relevant skills, then follow their instructions.
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