jimliu/science-skills
29 skills · 58 total installs
$npx skills add jimliu/science-skillsSkillInstalls
alphafold2Predict protein structure for monomers and multimers with AlphaFold2 via the ColabFold runner (Mirdita et al.boltzStructure prediction for protein, nucleic-acid, and small-molecule complexes with Boltz-2 (Passaro & Wohlwend et al. 2025, github.com/jwohlwend/boltz).borzoiPredict genome-wide functional tracks (RNA-seq, CAGE, DNase, ChIP) from DNA sequence with Borzoi.chai1Structure prediction for protein, nucleic-acid, and small-molecule complexes with the Chai-1 foundation model (Chai Discovery 2024,…compute-env-setupSet up a compute environment on a remote provider so Claude Science jobs can run there.customizeCreate, configure, and maintain custom agent profiles and author new skills via the `repl` tool.diffdockPredict small-molecule binding poses with DiffDock-L (Corso et al.esmfold2Biohub ESMFold2 / ESMFold2-Fast all-atom co-folding (Candido et al. 2026, github.com/Biohub/esm).evo2Score, embed, and generate DNA sequences with Evo 2, a long-context genomic foundation model.fair-esm2Embed proteins with Meta AI's ESM-2 (`fair-esm` package). Use this skill when: (1) Extracting per-residue or per-sequence embeddings for downstream ML, (2)…figure-composerCompose one publication-grade multi-panel figure. Entry from a one-line claim + data refs, OR from an existing figure via `derive_outline(png)`.figure-stylePublication-grade figure correctness and legibility rules. Load before drawing any plot and call `apply_figure_style()` — sets a role-mapped font-size ladder,…indication-dossierGenerate a therapeutic indication dossier. Covers the patient population, epidemiology, disease biology, standard of care, regulatory precedent, and landmark…ligandmpnnInverse-fold a backbone with ligand, nucleic-acid, and metal context using LigandMPNN (Dauparas et al. 2023, github.com/dauparas/LigandMPNN).literature-reviewFind, verify, and synthesize scientific literature — from "what's the seminal paper for X" through full multi-source reviews.managed-model-endpointsRegister a model service in the managed family — a local model server container the daemon starts/stops on demand, or a remote upstream model API (https).openfold3Structure prediction using OpenFold3, an open-weights PyTorch reproduction of AlphaFold3 from the AlQuraishi Lab.paper-narrativeJudge and reshape the STORY a paper's figures tell. Input is the work itself — manuscript (or abstract) + figure deck — no hand-written brief.pdf-exploreUse this skill when the user has attached a PDF, paper, report, or other document and the answer needs content from more than one place in it: summarize the…product-self-knowledgeStop and consult this skill whenever your response would include specific facts about Anthropic's products.proteinmpnnInverse-fold a protein backbone (PDB structure) into amino-acid sequence with ProteinMPNN (Dauparas et al. 2022, github.com/dauparas/ProteinMPNN).remote-compute-modalRun GPU jobs on the user's own Modal account via host.compute.create('byoc:modal', ...).remote-compute-sshSubmit→wait_for_notification→harvest workflow for the user's SSH/SLURM hosts. Load once you've decided to dispatch remote.scgptEmbed and annotate single-cell expression data with scGPT, a foundation model for single-cell biology.scvi-toolsProbabilistic single-cell RNA-seq with scvi-tools — scVI for a batch-corrected latent space, scANVI for semi-supervised label transfer, and Bayesian…self-awarenessClaude Science's own session database schema and SDK surface for introspection via host.query().skill-creatorCreate new skills, modify and improve existing skills, and measure skill performance.solublempnnInverse-fold a backbone with SolubleMPNN — ProteinMPNN retrained on a soluble-PDB subset (Dauparas et al.using-model-endpointCall a registered model endpoint over its native HTTP API from the endpoint's scoped inference kernel (BASE_URL preloaded).