Embed proteins with Meta AI's ESM-2 (fair-esm package). Use this skill when: (1) Extracting per-residue or per-sequence embeddings for downstream ML, (2) Masked-LM likelihood / mutation effect scoring, (3) Contact prediction from a sequence.
How to install fair-esm2?
jimliu/science-skills/fair-esm2
$npx -y skills add jimliu/science-skills --skill fair-esm2Installs into the current project.
›Prefer a prompt? Paste this to your agent
Run `npx skills use "https://github.com/jimliu/science-skills" --skill "jimliu/science-skills/fair-esm2"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/jimliu/science-skills" that are relevant to the current task. Run `npx skills add "https://github.com/jimliu/science-skills"` and select the relevant skills, then follow their instructions.
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