citation-management

Name: citation-management
Author: LeonChaoX

46installs61forks

How to install citation-management?

leonchaox/qinyan-academic-skills/citation-management

$npx -y skills add LeonChaoX/qinyan-academic-skills --skill citation-management

Installs into the current project.

Summary

Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information

Files · 1

View on GitHub

SKILL.md

1	# Citation Management
2
3	## Overview
4
5	Manage citations systematically throughout the research and writing process. This skill provides tools and strategies for searching academic databases (Google Scholar, PubMed), extracting accurate metadata from multiple sources (CrossRef, PubMed, arXiv), validating citation information, and generating properly formatted BibTeX entries.
6
7	Critical for maintaining citation accuracy, avoiding reference errors, and ensuring reproducible research. Integrates seamlessly with the literature-review skill for comprehensive research workflows.
8
9	## When to Use This Skill
10
11	Use this skill when:
12	- Searching for specific papers on Google Scholar or PubMed
13	- Converting DOIs, PMIDs, or arXiv IDs to properly formatted BibTeX
14	- Extracting complete metadata for citations (authors, title, journal, year, etc.)
15	- Validating existing citations for accuracy
16	- Cleaning and formatting BibTeX files
17	- Finding highly cited papers in a specific field
18	- Verifying that citation information matches the actual publication
19	- Building a bibliography for a manuscript or thesis
20	- Checking for duplicate citations
21	- Ensuring consistent citation formatting
22
23	## Visual Enhancement with Scientific Schematics
24
25	When creating documents with this skill, always consider adding scientific diagrams and schematics to enhance visual communication.
26
27	If your document does not already contain schematics or diagrams:
28	- Use the scientific-schematics skill to generate AI-powered publication-quality diagrams
29	- Simply describe your desired diagram in natural language
30	- Nano Banana Pro will automatically generate, review, and refine the schematic
31
32	For new documents: Scientific schematics should be generated by default to visually represent key concepts, workflows, architectures, or relationships described in the text.
33
34	How to generate schematics:
35	```bash
36	python scripts/generate_schematic.py "your diagram description" -o figures/output.png
37	```
38
39	The AI will automatically:
40	- Create publication-quality images with proper formatting
41	- Review and refine through multiple iterations
42	- Ensure accessibility (colorblind-friendly, high contrast)
43	- Save outputs in the figures/ directory
44
45	When to add schematics:
46	- Citation workflow diagrams
47	- Literature search methodology flowcharts
48	- Reference management system architectures
49	- Citation style decision trees
50	- Database integration diagrams
51	- Any complex concept that benefits from visualization
52
53	For detailed guidance on creating schematics, refer to the scientific-schematics skill documentation.
54
55	---
56
57	## Core Workflow
58
59	Citation management follows a systematic process:
60
61	### Phase 1: Paper Discovery and Search
62
63	Goal: Find relevant papers using academic search engines.
64
65	#### Google Scholar Search
66
67	Google Scholar provides the most comprehensive coverage across disciplines.
68
69	Basic Search:
70	```bash
71	# Search for papers on a topic
72	python scripts/search_google_scholar.py "CRISPR gene editing" \
73	--limit 50 \
74	--output results.json
75
76	# Search with year filter
77	python scripts/search_google_scholar.py "machine learning protein folding" \
78	--year-start 2020 \
79	--year-end 2024 \
80	--limit 100 \
81	--output ml_proteins.json
82	```
83
84	Advanced Search Strategies (see `references/google_scholar_search.md`):
85	- Use quotation marks for exact phrases: `"deep learning"`
86	- Search by author: `author:LeCun`
87	- Search in title: `intitle:"neural networks"`
88	- Exclude terms: `machine learning -survey`
89	- Find highly cited papers using sort options
90	- Filter by date ranges to get recent work
91
92	Best Practices:
93	- Use specific, targeted search terms
94	- Include key technical terms and acronyms
95	- Filter by recent years for fast-moving fields
96	- Check "Cited by" to find seminal papers
97	- Export top results for further analysis
98
99	#### PubMed Search
100
101	PubMed specializes in biomedical and life sciences literature (35+ million citations).
102
103	Basic Search:
104	```bash
105	# Search PubMed
106	python scripts/search_pubmed.py "Alzheimer's disease treatment" \
107	--limit 100 \
108	--output alzheimers.json
109
110	# Search with MeSH terms and filters
111	python scripts/search_pubmed.py \
112	--query '"Alzheimer Disease"[MeSH] AND "Drug Therapy"[MeSH]' \
113	--date-start 2020 \
114	--date-end 2024 \
115	--publication-types "Clinical Trial,Review" \
116	--output alzheimers_trials.json
117	```
118
119	Advanced PubMed Queries (see `references/pubmed_search.md`):
120	- Use MeSH terms: `"Diabetes Mellitus"[MeSH]`
121	- Field tags: `"cancer"[Title]`, `"Smith J"[Author]`
122	- Boolean opera

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citation-management

46installs61forks

View on GitHub

How to install citation-management?

leonchaox/qinyan-academic-skills/citation-management

$npx -y skills add LeonChaoX/qinyan-academic-skills --skill citation-management

Installs into the current project.

Summary

Files · 1

View on GitHub

SKILL.md

1	# Citation Management
2
3	## Overview
4
5	Manage citations systematically throughout the research and writing process. This skill provides tools and strategies for searching academic databases (Google Scholar, PubMed), extracting accurate metadata from multiple sources (CrossRef, PubMed, arXiv), validating citation information, and generating properly formatted BibTeX entries.
6
7	Critical for maintaining citation accuracy, avoiding reference errors, and ensuring reproducible research. Integrates seamlessly with the literature-review skill for comprehensive research workflows.
8
9	## When to Use This Skill
10
11	Use this skill when:
12	- Searching for specific papers on Google Scholar or PubMed
13	- Converting DOIs, PMIDs, or arXiv IDs to properly formatted BibTeX
14	- Extracting complete metadata for citations (authors, title, journal, year, etc.)
15	- Validating existing citations for accuracy
16	- Cleaning and formatting BibTeX files
17	- Finding highly cited papers in a specific field
18	- Verifying that citation information matches the actual publication
19	- Building a bibliography for a manuscript or thesis
20	- Checking for duplicate citations
21	- Ensuring consistent citation formatting
22
23	## Visual Enhancement with Scientific Schematics
24
25	When creating documents with this skill, always consider adding scientific diagrams and schematics to enhance visual communication.
26
27	If your document does not already contain schematics or diagrams:
28	- Use the scientific-schematics skill to generate AI-powered publication-quality diagrams
29	- Simply describe your desired diagram in natural language
30	- Nano Banana Pro will automatically generate, review, and refine the schematic
31
32	For new documents: Scientific schematics should be generated by default to visually represent key concepts, workflows, architectures, or relationships described in the text.
33
34	How to generate schematics:
35	```bash
36	python scripts/generate_schematic.py "your diagram description" -o figures/output.png
37	```
38
39	The AI will automatically:
40	- Create publication-quality images with proper formatting
41	- Review and refine through multiple iterations
42	- Ensure accessibility (colorblind-friendly, high contrast)
43	- Save outputs in the figures/ directory
44
45	When to add schematics:
46	- Citation workflow diagrams
47	- Literature search methodology flowcharts
48	- Reference management system architectures
49	- Citation style decision trees
50	- Database integration diagrams
51	- Any complex concept that benefits from visualization
52
53	For detailed guidance on creating schematics, refer to the scientific-schematics skill documentation.
54
55	---
56
57	## Core Workflow
58
59	Citation management follows a systematic process:
60
61	### Phase 1: Paper Discovery and Search
62
63	Goal: Find relevant papers using academic search engines.
64
65	#### Google Scholar Search
66
67	Google Scholar provides the most comprehensive coverage across disciplines.
68
69	Basic Search:
70	```bash
71	# Search for papers on a topic
72	python scripts/search_google_scholar.py "CRISPR gene editing" \
73	--limit 50 \
74	--output results.json
75
76	# Search with year filter
77	python scripts/search_google_scholar.py "machine learning protein folding" \
78	--year-start 2020 \
79	--year-end 2024 \
80	--limit 100 \
81	--output ml_proteins.json
82	```
83
84	Advanced Search Strategies (see `references/google_scholar_search.md`):
85	- Use quotation marks for exact phrases: `"deep learning"`
86	- Search by author: `author:LeCun`
87	- Search in title: `intitle:"neural networks"`
88	- Exclude terms: `machine learning -survey`
89	- Find highly cited papers using sort options
90	- Filter by date ranges to get recent work
91
92	Best Practices:
93	- Use specific, targeted search terms
94	- Include key technical terms and acronyms
95	- Filter by recent years for fast-moving fields
96	- Check "Cited by" to find seminal papers
97	- Export top results for further analysis
98
99	#### PubMed Search
100
101	PubMed specializes in biomedical and life sciences literature (35+ million citations).
102
103	Basic Search:
104	```bash
105	# Search PubMed
106	python scripts/search_pubmed.py "Alzheimer's disease treatment" \
107	--limit 100 \
108	--output alzheimers.json
109
110	# Search with MeSH terms and filters
111	python scripts/search_pubmed.py \
112	--query '"Alzheimer Disease"[MeSH] AND "Drug Therapy"[MeSH]' \
113	--date-start 2020 \
114	--date-end 2024 \
115	--publication-types "Clinical Trial,Review" \
116	--output alzheimers_trials.json
117	```
118
119	Advanced PubMed Queries (see `references/pubmed_search.md`):
120	- Use MeSH terms: `"Diabetes Mellitus"[MeSH]`
121	- Field tags: `"cancer"[Title]`, `"Smith J"[Author]`
122	- Boolean opera

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