gbif-species-occurrence-search-starter

Name: gbif-species-occurrence-search-starter
Author: ma-compbio-lab

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How to install gbif-species-occurrence-search-starter?

ma-compbio-lab/skillfoundry/gbif-species-occurrence-search-starter

$npx -y skills add ma-compbio-lab/SkillFoundry --skill gbif-species-occurrence-search-starter

Installs into the current project.

Summary

Use this skill to query the official GBIF API for a canonical species match and a small live occurrence sample.

Files · 1

SKILL.md

1	# GBIF Species Occurrence Search Starter
2
3	Use this skill to query the official GBIF API for a canonical species match and a small live occurrence sample.
4
5	## What it does
6
7	- Resolves a scientific name against the GBIF species matcher.
8	- Fetches a compact occurrence sample with optional country filtering.
9	- Returns a normalized JSON summary suitable for biodiversity data discovery and early species-distribution workflows.
10
11	## When to use it
12
13	- You need a verified starter for `Species distribution modeling`.
14	- You want a lightweight live biodiversity occurrence query without adding a heavyweight geospatial stack first.
15
16	## Example
17
18	```bash
19	python3 skills/ecology-evolution-and-biodiversity/gbif-species-occurrence-search-starter/scripts/run_gbif_species_occurrence_search.py \
20	--scientific-name "Puma concolor" \
21	--country US \
22	--out scratch/gbif/puma_concolor_us.json
23	```
24
25	## Verification
26
27	- Skill-local tests: `python3 -m unittest discover -s skills/ecology-evolution-and-biodiversity/gbif-species-occurrence-search-starter/tests -p 'test_*.py'`
28	- Repository smoke: `python3 -m unittest tests.smoke.test_phase30_empty_domain_seed_skills -v`

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