tooluniverse-gene-regulatory-networks
bymims-harvard· 57 skills
Gene regulatory network analysis — TF-target inference (JASPAR motifs, ChIP-seq), motif scanning, eQTL integration, perturbation evidence (knockout/overexpression). Use for 'which TF regulates gene X', 'which genes does TF Y target', regulatory pathway reconstruction. Distinguishes direct (binding) vs indirect (co-expression) regulatory evidence.
How to install tooluniverse-gene-regulatory-networks?
mims-harvard/tooluniverse/tooluniverse-gene-regulatory-networks
$npx -y skills add mims-harvard/tooluniverse --skill tooluniverse-gene-regulatory-networksInstalls into the current project.
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Run `npx skills use "https://github.com/mims-harvard/tooluniverse" --skill "mims-harvard/tooluniverse/tooluniverse-gene-regulatory-networks"` and follow the generated skill instructions now. Read its complete output, redirecting it to a temporary file first if necessary. Resolve relative paths from the supporting-files directory it provides.
Use the skills in "https://github.com/mims-harvard/tooluniverse" that are relevant to the current task. Run `npx skills add "https://github.com/mims-harvard/tooluniverse"` and select the relevant skills, then follow their instructions.
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