drugbank

Name: drugbank
Author: QSong-github

132stars4forks

How to install drugbank?

qsong-github/drugclaw/drugbank

$npx -y skills add QSong-github/DrugClaw --skill drugbank

Installs into the current project.

Summary

Query a locally downloaded DrugBank database. Use whenever the user asks about drug information, drug targets, drug-drug interactions, drug categories, or wants to look up any entity (DrugBank ID, drug name, CAS number, synonym) in DrugBank.

Files · 1

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SKILL.md

1	# DrugBank Local Query Skill
2
3	Search local DrugBank data by any entity. Auto-detects query type:
4
5	\| Input Pattern \| Detected As \| Match Logic \|
6	\|---\|---\|---\|
7	\| `DB00945` \| DrugBank ID \| exact on `drugbank_id` \|
8	\| anything else \| free text \| substring on `name`, `synonyms`, `cas_number` \|
9
10	## Data
11
12	- Base dir: `resources_metadata/drug_knowledgebase/DrugBank/`
13	- Files:
14	- `full database.xml` — rich fields: description, targets, interactions, categories, synonyms, groups
15	- `drugbank vocabulary.csv` — lightweight: DrugBank ID, name, CAS, synonyms
16	- Auto-select: prefers XML if present, falls back to vocabulary CSV
17
18	## API
19
20	\| Function \| Input \| Returns \|
21	\|---\|---\|---\|
22	\| `load(path)` \| file path (XML or TSV/CSV, auto-detected) \| `list[dict]` \|
23	\| `search(data, entity)` \| single entity string \| `list[dict]` \|
24	\| `search_batch(data, entities)` \| list or comma-separated string \| `dict[str, list[dict]]` \|
25	\| `summarize(hits, entity)` \| hit list + label \| compact text \|
26	\| `to_json(hits)` \| hit list \| JSON string \|
27
28	## Usage
29
30	```python
31	from 07_DrugBank import load, search, search_batch, summarize, to_json
32
33	data = load() # auto-selects XML or CSV
34
35	# single query
36	hits = search(data, "aspirin")
37	print(summarize(hits, "aspirin"))
38
39	# batch query
40	results = search_batch(data, ["metformin", "DB00316", "ibuprofen"])
41	for entity, hits in results.items():
42	print(summarize(hits, entity))
43
44	# JSON output
45	print(to_json(hits[:1]))
46	```
47
48	See `if __name__ == "__main__"` block in `07_DrugBank.py` for runnable examples.

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drugbank

132stars4forks

View on GitHub

How to install drugbank?

qsong-github/drugclaw/drugbank

$npx -y skills add QSong-github/DrugClaw --skill drugbank

Installs into the current project.

Summary

Files · 1

View on GitHub

SKILL.md

1	# DrugBank Local Query Skill
2
3	Search local DrugBank data by any entity. Auto-detects query type:
4
5	\| Input Pattern \| Detected As \| Match Logic \|
6	\|---\|---\|---\|
7	\| `DB00945` \| DrugBank ID \| exact on `drugbank_id` \|
8	\| anything else \| free text \| substring on `name`, `synonyms`, `cas_number` \|
9
10	## Data
11
12	- Base dir: `resources_metadata/drug_knowledgebase/DrugBank/`
13	- Files:
14	- `full database.xml` — rich fields: description, targets, interactions, categories, synonyms, groups
15	- `drugbank vocabulary.csv` — lightweight: DrugBank ID, name, CAS, synonyms
16	- Auto-select: prefers XML if present, falls back to vocabulary CSV
17
18	## API
19
20	\| Function \| Input \| Returns \|
21	\|---\|---\|---\|
22	\| `load(path)` \| file path (XML or TSV/CSV, auto-detected) \| `list[dict]` \|
23	\| `search(data, entity)` \| single entity string \| `list[dict]` \|
24	\| `search_batch(data, entities)` \| list or comma-separated string \| `dict[str, list[dict]]` \|
25	\| `summarize(hits, entity)` \| hit list + label \| compact text \|
26	\| `to_json(hits)` \| hit list \| JSON string \|
27
28	## Usage
29
30	```python
31	from 07_DrugBank import load, search, search_batch, summarize, to_json
32
33	data = load() # auto-selects XML or CSV
34
35	# single query
36	hits = search(data, "aspirin")
37	print(summarize(hits, "aspirin"))
38
39	# batch query
40	results = search_batch(data, ["metformin", "DB00316", "ibuprofen"])
41	for entity, hits in results.items():
42	print(summarize(hits, entity))
43
44	# JSON output
45	print(to_json(hits[:1]))
46	```
47
48	See `if __name__ == "__main__"` block in `07_DrugBank.py` for runnable examples.

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