tarkg

Name: tarkg
Author: QSong-github

132stars4forks

How to install tarkg?

qsong-github/drugclaw/tarkg

$npx -y skills add QSong-github/DrugClaw --skill tarkg

Installs into the current project.

Summary

Query canonical TarKG drug-target triplets. Use when the user asks about drug-target interactions, relation labels, disease/pathway context, or quick lookups for drugs/targets in TarKG.

Files · 1

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SKILL.md

1	# TarKG Query Skill
2
3	Query the canonical packaged TarKG TSV output.
4
5	## Data
6
7	- Path: `resources_metadata/dti/TarKG/tarkg.tsv`
8	- Columns: `drug`, `target`, `relation`, `disease`, `pathway`
9
10	## API
11
12	\| Function \| Input \| Returns \|
13	\|---\|---\|---\|
14	\| `load_tarkg(path)` \| TSV path \| `list[dict]` \|
15	\| `query_entity(entity, rows, limit)` \| single entity string \| `dict` \|
16	\| `query_entities(entities, path, limit)` \| list of entity strings \| `list[dict]` \|
17
18	`query_entity` returns keys used by `retrieve.py`: `matched`, `node_info`,
19	`outgoing_edges`, `incoming_edges`, `candidates`.
20
21	## Usage
22
23	Run `example.py` directly for demo queries against the canonical TSV.

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