rconsortium/pharma-skills
13 skills
$npx skills add rconsortium/pharma-skillsSkillInstalls
admiralParent skill for the admiral ADaM derivation family. Covers shared conventions used across all admiral child skills: library setup, pipe style, date derivation…admiral-adaeDerives an ADaM Adverse Events Analysis Dataset (ADAE) using the {admiral} R package and pharmaverse ecosystem.admiral-adslDerives an ADaM Subject-Level Analysis Dataset (ADSL) using the {admiral} R package and pharmaverse ecosystem.admiral-bdsDerives ADaM Basic Data Structure (BDS) datasets using the {admiral} R package. Initial scope covers ADVS (vital signs) and ADLB (laboratory values).benchmark-runnerAuto-discover all skills with evals in RConsortium/pharma-skills, benchmark each with vs.benchmark-summaryGenerate a combined benchmark analysis for the group-sequential-design skill by reading all benchmark GitHub issues, selecting the latest completed run per…clinical-trial-ipd-simEnd-to-end R/pharmaverse workflow to simulate individual patient data (IPD) for a registered clinical trial using a g-formula causal-DAG simulator.clinical-trial-simulationDesign and simulate clinical trials using the TrialSimulator R package and produce a QC-ready build-order-spine report that pairs each block of code with…group-sequential-designDesign group sequential clinical trials for survival endpoints (OS, PFS, DFS) with interim analyses, spending functions, boundaries, multiplicity, and…issue-to-evalConverts one or more GitHub Issues into standardized benchmark data using automated scripts.sdtm-oakDerives CDISC SDTM domains from raw clinical (EDC/eCRF) data using the {sdtm.oak} R package.statistical-reviewerSimulates an independent statistical reviewer auditing a clinical trial submission package (SDTM, ADaM, TLG/TLF, SAP, CSR).weekly-summaryGenerate a concise weekly progress summary for the pharma_skills repository.