willoscar/research-units-pipeline-skills
60 skills
$npx skills add willoscar/research-units-pipeline-skillsSkillInstalls
_template_reference_firstInternal template for creating or refactoring a skill into the repository's reference-first shape.agent-survey-corpusDownload a small corpus of open-access arXiv survey/review PDFs about agentic systems and extract text for style learning.anchor-sheetExtract per-subsection “anchor facts” (NO PROSE) from evidence packs so the writer is forced to include concrete numbers/benchmarks/limitations instead of…appendix-table-writerCurate reader-facing survey tables for the Appendix (clean layout + high information density), using only in-scope evidence and existing citation keys.argument-selfloopBuild a final, machine-readable argument snapshot from current H3 sections and refresh section fingerprints before merge.artifact-contract-auditorAudit one research Workspace for declared Unit outputs and Pipeline target Artifacts, writing `output/CONTRACT_REPORT.md`; use for mid-Run coverage snapshots…arxiv-searchRetrieve paper metadata from arXiv using keyword queries and save results as JSONL (`papers/papers_raw.jsonl`).beamer-compile-qaCompile the Beamer tutorial deck and write a build report. **Trigger**: beamer compile, slides compile, tutorial slides pdf, 编译幻灯片, beamer pdf.beamer-scaffoldGenerate a Beamer slide deck from the final tutorial and approved module structure.bias-assessorUse when `evidence-review` has an extraction table and needs lightweight risk-of-bias fields.chapter-briefsBuild per-chapter (H2) writing briefs (NO PROSE) so the final survey reads like a paper (chapter leads + cross-H3 coherence) without inflating the ToC.chapter-lead-writerWrite H2 chapter lead blocks (`sections/S<sec_id>_lead.md`) that preview the chapter's comparison lens and connect its H3 subsections, without adding new…chapter-skeletonBuild a retrieval-informed chapter skeleton (`outline/chapter_skeleton.yml`) from taxonomy/core scope before stable H3 decomposition.checkpoint-briefProject completed stage Artifacts into a concise human-review block in `DECISIONS.md`; use before a Workflow checkpoint, not for Workflow routing or approval.citation-anchoringRegression-check citation anchoring (citations stay in the same subsection) to prevent “polish drift” that breaks claim→evidence alignment.citation-diversifierRaise citation diversity/density (NO NEW FACTS): generate an in-scope “citation budget” plan per H3 so drafts stop failing the global unique-citation gate and…citation-injectorApply a `citation-diversifier` budget report by injecting *in-scope* citations into an existing draft (NO NEW FACTS), so the run passes the global…citation-verifierGenerate and verify BibTeX entries from paper notes, writing `citations/ref.bib` and `citations/verified.jsonl`.claim-evidence-matrixBuild a section-by-section claim–evidence matrix (`outline/claim_evidence_matrix.md`) from the outline and paper notes.claim-matrix-rewriterRewrite `outline/claim_evidence_matrix.md` as a projection/index of evidence packs (NO PROSE), so claims/axes are driven by `outline/evidence_drafts.jsonl`…claims-extractorUse when a review workspace has manuscript text and needs a traceable claim ledger.concept-graphUse when an approved tutorial spec exists and the run needs a deterministic prerequisite graph before module planning.dedupe-rankUse when a broad paper candidate pool needs deterministic deduplication and a stable core set. **Trigger**: dedupe, rank, core set, 去重, 排序, 精选论文, 核心集合.deliverable-selfloopScore an existing reader-facing deliverable and emit a deterministic PASS/FAIL scorecard plus bounded repair plan; use after synthesis, not to rewrite content.draft-polisherAudit-style editing pass for `output/DRAFT.md`: remove template boilerplate, improve coherence, and enforce citation anchoring.evaluation-anchor-checkerAudit and rewrite evaluation/numeric claims to ensure they carry minimal protocol context (task + metric + constraint) and avoid underspecified model naming.evidence-auditorUse when `paper-review` needs a claim-by-claim evidence gap report grounded in an extracted claim ledger.evidence-binderBind addressable evidence IDs from `papers/evidence_bank.jsonl` to each subsection (H3), producing `outline/evidence_bindings.jsonl`.evidence-draftCreate per-subsection evidence packs (NO PROSE): claim candidates, concrete comparisons, evaluation protocol, limitations, plus citation-backed evidence…evidence-selfloopEvidence self-loop for surveys: read evidence bindings + evidence packs, then write an actionable upstream TODO plan (which stage/skill to fix) before writing…exercise-builderUse when a tutorial module plan exists but each module still needs a verifiable teaching loop.extraction-formUse when `evidence-review` has screened includes and needs a schema-aligned extraction table.front-matter-writerWrite the survey's front matter files (Abstract, Introduction, Related Work, Discussion, Conclusion) in paper voice, with high citation density and a single…global-reviewerGlobal consistency review for survey drafts: terminology, cross-section coherence, and scope/citation hygiene.grad-paragraphWrite one survey-quality paragraph from evidence packs (tension → contrast → evaluation anchor → limitation).human-checkpointReview and record one pending human checkpoint in a research Workspace; use when a HUMAN Unit is blocked on an `Approve C*` decision, and never treat silence…idea-briefLock an ideation run into a single-source-of-truth brainstorm brief (`output/trace/IDEA_BRIEF.md`) and a replayable multi-query plan (`queries.md`).idea-direction-generatorGenerate a compact pool of discussion-worthy research directions from the signal table, writing `output/trace/IDEA_DIRECTION_POOL.md`.idea-memo-writerSynthesize the shortlist into a discussion-ready research idea brainstorm memo, writing `output/REPORT.md`, `output/APPENDIX.md`, and `output/REPORT.json`.idea-screenerScreen the direction pool with a discussion-first scoring pass, writing `output/trace/IDEA_SCREENING_TABLE.md`.idea-shortlist-curatorConverge the screened direction pool into a small, discussion-ready shortlist, writing `output/trace/IDEA_SHORTLIST.md`.idea-signal-mapperMap paper notes + taxonomy into a signal table of tensions, missing pieces, and promising academic axes for brainstorm discussion.keyword-expansionExpand and refine search keywords (synonyms, acronyms, exclusions) and update `queries.md`.latex-compile-qaCompile a LaTeX project and run basic QA (missing refs, bib errors, broken citations), producing `latex/main.pdf` and a build report.latex-scaffoldScaffold a LaTeX project (`latex/main.tex`, optional bibliography wiring, structure) from an existing Markdown draft.limitation-weaverRewrite limitation passages so the paper keeps limitations without falling into count-based slot phrases (e.g., \"Two limitations…\") across many H3s.literature-engineerMulti-route literature expansion + metadata normalization for evidence-first surveys.manuscript-ingestUse when `paper-review` needs a canonical manuscript text artifact before claim extraction.module-plannerUse when a tutorial concept DAG exists and the run needs an ordered teaching plan with objectives and outputs.module-source-coverageUse when a tutorial module plan exists and the run needs an auditable module-to-source grounding file before prose.novelty-matrixUse when `paper-review` needs overlap/delta positioning against provided related work.opener-variatorRewrite subsection openers so they stop reading like a generated table-of-contents: remove \"overview/narration\" stems and reduce repeated opener cadences…outline-budgeterMerge/simplify an over-fragmented outline to hit a paper-like section budget (NO PROSE): target final ToC ~6–8 H2, fewer thicker H3.outline-builderConvert a taxonomy (`outline/taxonomy.yml`) into a bullet-only outline (`outline/outline.yml`) with sections/subsections.outline-refinerPlanner-pass coverage + redundancy report for an outline+mapping, producing `outline/coverage_report.md` and `outline/outline_state.jsonl`.paper-notesWrite structured notes for each paper in the core set into `papers/paper_notes.jsonl` (summary/method/results/limitations).paragraph-curatorDeterministically compact final H3 bodies to the active delivery profile's paragraph budget without deleting prose or changing citation-block order.pdf-text-extractorDownload PDFs (when available) and extract plain text to support full-text evidence, writing `papers/fulltext_index.jsonl` and `papers/fulltext/*.txt`.pipeline-auditorAudit/regression checks for the evidence-first survey pipeline: citation health, per-section coverage, placeholder leakage, and template repetition.pipeline-routerRoute an unbound research Goal to one Workflow or materialize its initial C0 kickoff block; use during initial binding, not for later checkpoint summaries or…