willoscar/research-units-pipeline-skills
60 skills · 713 total installs
$npx skills add willoscar/research-units-pipeline-skillsSkillInstalls
citation-verifierGenerate and verify BibTeX entries from paper notes, writing `citations/ref.bib` and `citations/verified.jsonl`. **Trigger**: citation, BibTeX, ref.bib, verified.jsonl, references, 引用, 参考文献. **Use wheclaim-evidence-matrixBuild a section-by-section claim–evidence matrix (`outline/claim_evidence_matrix.md`) from the outline and paper notes. **Trigger**: claim–evidence matrix, evidence mapping, 证据矩阵, 主张-证据对齐. **Use when*arxiv-searchRetrieve paper metadata from arXiv using keyword queries and save results as JSONL (`papers/papers_raw.jsonl`). **Trigger**: arXiv, arxiv, paper search, metadata retrieval, 文献检索, 论文检索, 拉取元数据, 离线导入. **chapter-briefsBuild per-chapter (H2) writing briefs (NO PROSE) so the final survey reads like a paper (chapter leads + cross-H3 coherence) without inflating the ToC. **Trigger**: chapter briefs, H2 briefs, chapter citation-anchoringRegression-check citation anchoring (citations stay in the same subsection) to prevent “polish drift” that breaks claim→evidence alignment. **Trigger**: citation anchoring, citation drift, regression,citation-diversifierRaise citation diversity/density (NO NEW FACTS): generate an in-scope “citation budget” plan per H3 so drafts stop failing the global unique-citation gate and stop looking under-cited. **Trigger**: ciconcept-graphUse when an approved tutorial spec exists and the run needs a deterministic prerequisite graph before module planning. **Trigger**: concept graph, prerequisite graph, dependency graph, 概念图, 先修关系. **Uschapter-lead-writerWrite H2 chapter lead blocks (`sections/S<sec_id>_lead.md`) that preview the chapter's comparison lens and connect its H3 subsections, without adding new facts. **Trigger**: chapter lead writer, secticlaim-matrix-rewriterRewrite `outline/claim_evidence_matrix.md` as a projection/index of evidence packs (NO PROSE), so claims/axes are driven by `outline/evidence_drafts.jsonl` rather than outline placeholders. **Trigger*claims-extractorUse when a review workspace has manuscript text and needs a traceable claim ledger. **Trigger**: claims extractor, extract claims, contributions, assumptions, peer review, 审稿, 主张提取. **Use when**: 审稿/评agent-survey-corpusDownload a small corpus of open-access arXiv survey/review PDFs about agentic systems and extract text for style learning. **Trigger**: agent survey corpus, ref corpus, download surveys, 学习综述写法, 下载 suanchor-sheetExtract per-subsection “anchor facts” (NO PROSE) from evidence packs so the writer is forced to include concrete numbers/benchmarks/limitations instead of generic summaries. **Trigger**: anchor sheet,bias-assessorUse when `evidence-review` has an extraction table and needs lightweight risk-of-bias fields. **Trigger**: bias, risk-of-bias, RoB, evidence quality, 偏倚评估, 证据质量. **Use when**: `evidence-review` 已生成 `pcitation-injectorApply a `citation-diversifier` budget report by injecting *in-scope* citations into an existing draft (NO NEW FACTS), so the run passes the global unique-citation gate without citation dumps. **Triggeargument-selfloopBuild a final, machine-readable argument snapshot from current H3 sections and refresh section fingerprints before merge. **Trigger**: argument snapshot, section ledger, consistency contract, final seartifact-contract-auditorAudit one research Workspace for declared Unit outputs and Pipeline target Artifacts, writing `output/CONTRACT_REPORT.md`; use for mid-Run coverage snapshots or final delivery completeness, not deep pappendix-table-writerCurate reader-facing survey tables for the Appendix (clean layout + high information density), using only in-scope evidence and existing citation keys. **Trigger**: appendix tables, publishable tables_template_reference_firstInternal template for creating or refactoring a skill into the repository's reference-first shape. **Trigger**: reference-first template, blueprint skill, create a reusable skill, refactor a script-hebeamer-compile-qaCompile the Beamer tutorial deck and write a build report. **Trigger**: beamer compile, slides compile, tutorial slides pdf, 编译幻灯片, beamer pdf. **Use when**: `source-tutorial` 的 C4，已有 `latex/slides/mabeamer-scaffoldGenerate a Beamer slide deck from the final tutorial and approved module structure. **Trigger**: beamer scaffold, slides from tutorial, tutorial slides, 生成 beamer, 教程幻灯片. **Use when**: `source-tutoriachapter-skeletonBuild a retrieval-informed chapter skeleton (`outline/chapter_skeleton.yml`) from taxonomy/core scope before stable H3 decomposition. **Trigger**: chapter skeleton, chapter-level outline, H2 skeleton,checkpoint-briefProject completed stage Artifacts into a concise human-review block in `DECISIONS.md`; use before a Workflow checkpoint, not for Workflow routing or approval.dedupe-rankUse when a broad paper candidate pool needs deterministic deduplication and a stable core set. **Trigger**: dedupe, rank, core set, 去重, 排序, 精选论文, 核心集合. **Use when**: 检索后需要把广覆盖集合收敛成可管理的 core set（用于 taxdeliverable-selfloopScore an existing reader-facing deliverable and emit a deterministic PASS/FAIL scorecard plus bounded repair plan; use after synthesis, not to rewrite content.draft-polisherAudit-style editing pass for `output/DRAFT.md`: remove template boilerplate, improve coherence, and enforce citation anchoring. **Trigger**: polish draft, de-template, coherence pass, remove boilerplaevaluation-anchor-checkerAudit and rewrite evaluation/numeric claims to ensure they carry minimal protocol context (task + metric + constraint) and avoid underspecified model naming. **Trigger**: evaluation anchor checker, nuevidence-auditorUse when `paper-review` needs a claim-by-claim evidence gap report grounded in an extracted claim ledger. **Trigger**: evidence audit, missing evidence, unsupported claims, 审稿证据审计, 证据缺口. **Use when**:evidence-binderBind addressable evidence IDs from `papers/evidence_bank.jsonl` to each subsection (H3), producing `outline/evidence_bindings.jsonl`. **Trigger**: evidence binder, evidence plan, section->evidence mapevidence-draftCreate per-subsection evidence packs (NO PROSE): claim candidates, concrete comparisons, evaluation protocol, limitations, plus citation-backed evidence snippets with provenance. **Trigger**: evidenceevidence-selfloopEvidence self-loop for surveys: read evidence bindings + evidence packs, then write an actionable upstream TODO plan (which stage/skill to fix) before writing more prose. **Trigger**: evidence self-loexercise-builderUse when a tutorial module plan exists but each module still needs a verifiable teaching loop. **Trigger**: exercises, practice, verification checklist, 教程练习, 可验证作业. **Use when**: tutorial 的 C2，已有 `ouextraction-formUse when `evidence-review` has screened includes and needs a schema-aligned extraction table. **Trigger**: extraction form, extraction table, data extraction, 信息提取, 提取表. **Use when**: `evidence-reviewfront-matter-writerWrite the survey's front matter files (Abstract, Introduction, Related Work, Discussion, Conclusion) in paper voice, with high citation density and a single evidence-policy paragraph. **Trigger**: froglobal-reviewerGlobal consistency review for survey drafts: terminology, cross-section coherence, and scope/citation hygiene. **Trigger**: global review, consistency check, coherence audit, 术语一致性, 全局回看, 章节呼应, 拷打 wrigrad-paragraphWrite one survey-quality paragraph from evidence packs (tension → contrast → evaluation anchor → limitation). **Trigger**: grad paragraph, paragraph micro-structure, argument paragraph, 研究生段落, 论证段落, 对human-checkpointReview and record one pending human checkpoint in a research Workspace; use when a HUMAN Unit is blocked on an `Approve C*` decision, and never treat silence or artifact existence as approval.idea-briefLock an ideation run into a single-source-of-truth brainstorm brief (`output/trace/IDEA_BRIEF.md`) and a replayable multi-query plan (`queries.md`). **Trigger**: idea brief, ideation brief, research iidea-direction-generatorGenerate a compact pool of discussion-worthy research directions from the signal table, writing `output/trace/IDEA_DIRECTION_POOL.md`. **Trigger**: idea direction pool, brainstorm directions, researchidea-memo-writerSynthesize the shortlist into a discussion-ready research idea brainstorm memo, writing `output/REPORT.md`, `output/APPENDIX.md`, and `output/REPORT.json`. **Trigger**: idea memo, brainstorm memo, residea-screenerScreen the direction pool with a discussion-first scoring pass, writing `output/trace/IDEA_SCREENING_TABLE.md`. **Trigger**: idea screener, screening table, brainstorm screening, 方向筛选表. **Use when**: idea-shortlist-curatorConverge the screened direction pool into a small, discussion-ready shortlist, writing `output/trace/IDEA_SHORTLIST.md`. **Trigger**: idea shortlist, shortlist directions, brainstorm shortlist, 方向 shoidea-signal-mapperMap paper notes + taxonomy into a signal table of tensions, missing pieces, and promising academic axes for brainstorm discussion. Writes `output/trace/IDEA_SIGNAL_TABLE.md`. **Trigger**: idea signal keyword-expansionExpand and refine search keywords (synonyms, acronyms, exclusions) and update `queries.md`. **Trigger**: keyword expansion, synonyms, exclusions, queries.md, 关键词扩展, 同义词, 排除词. **Use when**: 检索覆盖不足/噪声过大latex-compile-qaCompile a LaTeX project and run basic QA (missing refs, bib errors, broken citations), producing `latex/main.pdf` and a build report. **Trigger**: latex compile, build PDF, LaTeX errors, missing refs,latex-scaffoldScaffold a LaTeX project (`latex/main.tex`, optional bibliography wiring, structure) from an existing Markdown draft. **Trigger**: latex scaffold, md→tex, LaTeX 项目骨架, 生成 main.tex. **Use when**: 需要 LaTlimitation-weaverRewrite limitation passages so the paper keeps limitations without falling into count-based slot phrases (e.g., \"Two limitations…\") across many H3s. **Trigger**: limitation weaver, rewrite limitatioliterature-engineerMulti-route literature expansion + metadata normalization for evidence-first surveys. **Trigger**: evidence collector, literature engineer, 文献扩充, 多路召回, snowballing, cited by, references, 元信息增强, provenmanuscript-ingestUse when `paper-review` needs a canonical manuscript text artifact before claim extraction. **Trigger**: ingest paper, manuscript text, provide paper, paper.md, 输入论文, 导入稿件, 审稿输入. **Use when**: You aremodule-plannerUse when a tutorial concept DAG exists and the run needs an ordered teaching plan with objectives and outputs. **Trigger**: module plan, tutorial modules, course outline, 模块规划, module_plan.yml. **Use module-source-coverageUse when a tutorial module plan exists and the run needs an auditable module-to-source grounding file before prose. **Trigger**: module coverage, source coverage, tutorial grounding, 模块覆盖, 来源覆盖. **Usenovelty-matrixUse when `paper-review` needs overlap/delta positioning against provided related work. **Trigger**: novelty matrix, prior-work matrix, overlap/delta, 相关工作对比, 新颖性矩阵. **Use when**: `paper-review` 中评估 noopener-variatorRewrite subsection openers so they stop reading like a generated table-of-contents: remove \"overview/narration\" stems and reduce repeated opener cadences across H3s. **Trigger**: opener variator, opoutline-budgeterMerge/simplify an over-fragmented outline to hit a paper-like section budget (NO PROSE): target final ToC ~6–8 H2, fewer thicker H3. **Trigger**: outline budget, merge sections, too many sections, H3 outline-builderConvert a taxonomy (`outline/taxonomy.yml`) into a bullet-only outline (`outline/outline.yml`) with sections/subsections. **Trigger**: outline builder, bullet outline, outline.yml, 大纲生成, bullets-only.outline-refinerPlanner-pass coverage + redundancy report for an outline+mapping, producing `outline/coverage_report.md` and `outline/outline_state.jsonl`. **Trigger**: planner, dynamic outline, outline refinement, cpaper-notesWrite structured notes for each paper in the core set into `papers/paper_notes.jsonl` (summary/method/results/limitations). **Trigger**: paper notes, structured notes, reading notes, 论文笔记, paper_notesparagraph-curatorDeterministically compact final H3 bodies to the active delivery profile's paragraph budget without deleting prose or changing citation-block order. **Trigger**: paragraph compaction, paragraph budgetpdf-text-extractorDownload PDFs (when available) and extract plain text to support full-text evidence, writing `papers/fulltext_index.jsonl` and `papers/fulltext/*.txt`. **Trigger**: PDF download, fulltext, extract texpipeline-auditorAudit/regression checks for the evidence-first survey pipeline: citation health, per-section coverage, placeholder leakage, and template repetition. **Trigger**: auditor, audit, regression test, qualipipeline-routerRoute an unbound research Goal to one Workflow or materialize its initial C0 kickoff block; use during initial binding, not for later checkpoint summaries or approval.