xuzhougeng/wisp-science
42 skills
$npx skills add xuzhougeng/wisp-scienceSkillInstalls
agent-infiniUse the InfiniSynapse CLI (`agent_infini`) for multi-turn AI data-analysis tasks, database/RAG context, and task workspace files.alphafold2Predict protein structure for monomers and multimers with AlphaFold2 via the ColabFold runner (Mirdita et al.bear-counterbear-mapbear-onboardbear-proposebear-reviewbear-scoopbear-supportbear-traceboltzStructure prediction for protein, nucleic-acid, and small-molecule complexes with Boltz-2 (Passaro & Wohlwend et al. 2025, github.com/jwohlwend/boltz).borzoiPredict genome-wide functional tracks (RNA-seq, CAGE, DNase, ChIP) from DNA sequence with Borzoi.browser-useUse this skill to drive the user's real, persistent Chrome/Chromium session — open pages, read them, click, fill and submit forms, navigate, switch tabs, or…chai1Structure prediction for protein, nucleic-acid, and small-molecule complexes with the Chai-1 foundation model (Chai Discovery 2024,…compute-env-setupSet up and validate a reproducible Python or R environment on a Wisp execution context.customizeCreate a Wisp specialist or author a project-local skill using the tools Wisp actually exposes.diffdockPredict small-molecule binding poses with DiffDock-L (Corso et al.esmfold2Biohub ESMFold2 / ESMFold2-Fast all-atom co-folding (Candido et al. 2026, github.com/Biohub/esm).evo2Score, embed, and generate DNA sequences with Evo 2, a long-context genomic foundation model.fair-esm2Embed proteins with Meta AI's ESM-2 (`fair-esm` package). Use this skill when: (1) Extracting per-residue or per-sequence embeddings for downstream ML, (2)…figure-composerCompose or improve a publication-grade multi-panel scientific figure from a claim, concrete data paths, or an existing image.figure-stylePublication-grade figure correctness and legibility rules. Load before drawing any plot and call `apply_figure_style()` — sets a role-mapped font-size ladder,…indication-dossierGenerate a therapeutic indication dossier. Covers the patient population, epidemiology, disease biology, standard of care, regulatory precedent, and landmark…journal-club-pptUse this skill whenever the user provides a scientific paper PDF and asks for a group-meeting literature report, journal-club slides, 文献汇报PPT, 组会PPT, paper…ligandmpnnInverse-fold a backbone with ligand, nucleic-acid, and metal context using LigandMPNN (Dauparas et al. 2023, github.com/dauparas/LigandMPNN).literature-reviewFind, verify, and synthesize scientific literature — from "what's the seminal paper for X" through full multi-source reviews.local-env-setupConfigure the local wisp-science runtime — uv/Python bootstrap, Node+scimaster-cli for bear-* literature skills, pixi for bioinformatics multi-env analysis.managed-model-endpointsExplain Wisp's current managed-model endpoint boundary and plan a safe integration.openfold3Structure prediction using OpenFold3, an open-weights PyTorch reproduction of AlphaFold3 from the AlQuraishi Lab.paper-narrativeJudge and reshape the story told by a manuscript and its figure deck.pdf-exploreUse this skill when the user has attached a PDF, paper, report, or other document and the answer needs its content: summarize a section, compare sections, read…probe-compute-environmentInspect a registered execution server before compute planning and interpret its persisted capability profile.product-self-knowledgeproteinmpnnInverse-fold a protein backbone (PDB structure) into amino-acid sequence with ProteinMPNN (Dauparas et al. 2022, github.com/dauparas/ProteinMPNN).remote-compute-modalExplain Wisp's current Modal boundary and migrate a requested Modal workload to a supported direct SSH Run when possible.remote-compute-sshSubmit recoverable SSH-direct research Runs with live progress cards and model-free monitoring.scgptEmbed and annotate single-cell expression data with scGPT, a foundation model for single-cell biology.scvi-toolsProbabilistic single-cell RNA-seq with scvi-tools — scVI for a batch-corrected latent space, scANVI for semi-supervised label transfer, and Bayesian…self-awarenessWisp-science's actual agent tool surface and runtime boundaries.skill-creatorCreate, update, validate, and evaluate Wisp skills. Use when authoring a project-local or installable skill, refining its trigger description, adding…solublempnnInverse-fold a backbone with SolubleMPNN — ProteinMPNN retrained on a soluble-PDB subset (Dauparas et al.using-model-endpointInvoke an already configured model endpoint from a supported Wisp execution context and capture the bounded inference as a Run.